[Bug 252965] biology/kallisto: failure with HDF5 1.12
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Sun Jan 24 10:07:15 UTC 2021
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=252965
Bug ID: 252965
Summary: biology/kallisto: failure with HDF5 1.12
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Only Me
Priority: ---
Component: Individual Port(s)
Assignee: jwb at freebsd.org
Reporter: thierry at FreeBSD.org
Assignee: jwb at freebsd.org
Flags: maintainer-feedback?(jwb at freebsd.org)
science/hdf5 should be upgraded to 1.12, but some ports are not compatible with
this version, and it has been suggested to repocopy the actual port to
science/hdf5-110.
PR 251894 propose a patch to do that, and an exp-run has been launched to
detect the incompatibilities.
Unfortunately, your port biology/kallisto failed: see
http://package18.nyi.freebsd.org/data/121amd64-default-foo/2021-01-20_21h30m48s/logs/errors/kallisto-0.46.1,1.log
(this looks like a missing -lz?)
Could you please propose a patch, either to fix it with 1.12 or to switch to
hdf5-110?
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