[Bug 246727] science-py-scikit-learn

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=246727

            Bug ID: 246727
           Summary: science-py-scikit-learn
           Product: Ports & Packages
           Version: Latest
          Hardware: i386
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: ports-bugs at FreeBSD.org
          Reporter: chris at crvintel.com

The following python code:

from sklearn import preprocessing 
from sklearn.cluster import AffinityPropagation

Produces this trace back after installing py37-scikit-sparse:

Traceback (most recent call last):
  File "./network", line 6, in <module>
    from sklearn import preprocessing 
  File "/usr/local/lib/python3.7/site-packages/sklearn/__init__.py", line 74,
in <module>
    from .base import clone
  File "/usr/local/lib/python3.7/site-packages/sklearn/base.py", line 20, in
<module>
    from .utils import _IS_32BIT
  File "/usr/local/lib/python3.7/site-packages/sklearn/utils/__init__.py", line
25, in <module>
    from .fixes import np_version
  File "/usr/local/lib/python3.7/site-packages/sklearn/utils/fixes.py", line
18, in <module>
    import scipy.stats
  File "/usr/local/lib/python3.7/site-packages/scipy/stats/__init__.py", line
367, in <module>
    from .stats import *
  File "/usr/local/lib/python3.7/site-packages/scipy/stats/stats.py", line 173,
in <module>
    from . import distributions
  File "/usr/local/lib/python3.7/site-packages/scipy/stats/distributions.py",
line 10, in <module>
    from ._distn_infrastructure import (entropy, rv_discrete, rv_continuous,
  File
"/usr/local/lib/python3.7/site-packages/scipy/stats/_distn_infrastructure.py",
line 24, in <module>
    from scipy import optimize
  File "/usr/local/lib/python3.7/site-packages/scipy/optimize/__init__.py",
line 387, in <module>
    from ._minimize import *
  File "/usr/local/lib/python3.7/site-packages/scipy/optimize/_minimize.py",
line 30, in <module>
    from ._trustregion_constr import _minimize_trustregion_constr
  File
"/usr/local/lib/python3.7/site-packages/scipy/optimize/_trustregion_constr/__init__.py",
line 4, in <module>
    from .minimize_trustregion_constr import _minimize_trustregion_constr
  File
"/usr/local/lib/python3.7/site-packages/scipy/optimize/_trustregion_constr/minimize_trustregion_constr.py",
line 11, in <module>
    from .equality_constrained_sqp import equality_constrained_sqp
  File
"/usr/local/lib/python3.7/site-packages/scipy/optimize/_trustregion_constr/equality_constrained_sqp.py",
line 5, in <module>
    from .projections import projections
  File
"/usr/local/lib/python3.7/site-packages/scipy/optimize/_trustregion_constr/projections.py",
line 9, in <module>
    from sksparse.cholmod import cholesky_AAt
  File "sksparse/cholmod.pyx", line 240, in init sksparse.cholmod
AssertionError
[tmp]$ 

This was discovered after installing py37-networkx which depends on
py37-scikit-sparse.

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