[Bug 237848] biology/tRNAscan-SE: fix build with GCC-based architecturs

bugzilla-noreply at freebsd.org bugzilla-noreply at freebsd.org
Sun May 12 10:28:14 UTC 2019


https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=237848

            Bug ID: 237848
           Summary: biology/tRNAscan-SE: fix build with GCC-based
                    architecturs
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: ports-bugs at FreeBSD.org
          Reporter: pkubaj at FreeBSD.org
                CC: mzaki at niid.go.jp
             Flags: maintainer-feedback?(mzaki at niid.go.jp)
                CC: mzaki at niid.go.jp

Created attachment 204336
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=204336&action=edit
patch

Recently, after testing, I committed a change to use new compiler on GCC
architectures.

It turns out this was not needed, there's an issue with threaded compilation
which manifests in:
--- bin/EukHighConfidenceFilter ---
sh: cannot create bin/EukHighConfidenceFilter: No such file or directory
--- bin/fasta2gsi ---
sh: cannot create bin/fasta2gsi: No such file or directory
--- bin/sstofa ---
sh: cannot create bin/sstofa: No such file or directory

Remove USES=compiler:c11 and add MAKE_JOBS_UNSAFE=yes to fix it.

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