[Bug 237848] biology/tRNAscan-SE: fix build with GCC-based architecturs
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bugzilla-noreply at freebsd.org
Sun May 12 10:28:14 UTC 2019
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=237848
Bug ID: 237848
Summary: biology/tRNAscan-SE: fix build with GCC-based
architecturs
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Only Me
Priority: ---
Component: Individual Port(s)
Assignee: ports-bugs at FreeBSD.org
Reporter: pkubaj at FreeBSD.org
CC: mzaki at niid.go.jp
Flags: maintainer-feedback?(mzaki at niid.go.jp)
CC: mzaki at niid.go.jp
Created attachment 204336
--> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=204336&action=edit
patch
Recently, after testing, I committed a change to use new compiler on GCC
architectures.
It turns out this was not needed, there's an issue with threaded compilation
which manifests in:
--- bin/EukHighConfidenceFilter ---
sh: cannot create bin/EukHighConfidenceFilter: No such file or directory
--- bin/fasta2gsi ---
sh: cannot create bin/fasta2gsi: No such file or directory
--- bin/sstofa ---
sh: cannot create bin/sstofa: No such file or directory
Remove USES=compiler:c11 and add MAKE_JOBS_UNSAFE=yes to fix it.
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