[Bug 230609] biology/seqtools: fails to build with LLD 7

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=230609

            Bug ID: 230609
           Summary: biology/seqtools: fails to build with LLD 7
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Keywords: needs-patch
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: pi at FreeBSD.org
          Reporter: jbeich at FreeBSD.org
            Blocks: 230355
             Flags: maintainer-feedback?(pi at FreeBSD.org)
          Assignee: pi at FreeBSD.org

$ poudriere jail -cj clang7 -a amd64 -v projects/clang700-import -m svn+https
$ poudriere testport -j clang7 biology/seqtools
[...]
ld: error: undefined symbol: dumpStack
>>> referenced by errAbort.c
>>>               libblatSrc_la-errAbort.o:(pushWarnHandler) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: dumpStack
>>> referenced by errAbort.c
>>>               libblatSrc_la-errAbort.o:(popWarnHandler) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: dumpStack
>>> referenced by errAbort.c
>>>               libblatSrc_la-errAbort.o:(pushAbortHandler) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: dumpStack
>>> referenced by errAbort.c
>>>               libblatSrc_la-errAbort.o:(popAbortHandler) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: dumpStack
>>> referenced by errAbort.c
>>>               libblatSrc_la-errAbort.o:(pushDebugAbort) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: dumpStack
>>> referenced by errAbort.c
>>>               libblatSrc_la-errAbort.o:(pushWarnAbort) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: dumpStack
>>> referenced by errAbort.c
>>>               libblatSrc_la-errAbort.o:(pushSilentWarnHandler) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: fileSize
>>> referenced by common.c
>>>               libblatSrc_la-common.o:(fileExists) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: clock1000
>>> referenced by common.c
>>>               libblatSrc_la-common.o:(uglyTime) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: makeDir
>>> referenced by common.c
>>>               libblatSrc_la-common.o:(makeDirs) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: makeDir
>>> referenced by common.c
>>>               libblatSrc_la-common.o:(makeDirs) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: clock1
>>> referenced by common.c
>>>               libblatSrc_la-common.o:(dateIsOld) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: clock1
>>> referenced by common.c
>>>               libblatSrc_la-common.o:(dateIsOlderBy) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: dumpStack
>>> referenced by cheapcgi.c
>>>               libblatSrc_la-cheapcgi.o:(catchSignal) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: fileSize
>>> referenced by obscure.c
>>>               libblatSrc_la-obscure.o:(readInGulp) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: fileSize
>>> referenced by obscure.c
>>>               libblatSrc_la-obscure.o:(readAllWords) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: makeDir
>>> referenced by portimpl.c
>>>               libblatSrc_la-portimpl.o:(makeDirsOnPath) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: makeDir
>>> referenced by portimpl.c
>>>               libblatSrc_la-portimpl.o:(makeDirsOnPath) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: rTempName
>>> referenced by servBrcMcw.c
>>>               libblatSrc_la-servBrcMcw.o:(_makeTempName) in archive ../gbtools/.libs/libgbtools.a

ld: error: undefined symbol: rTempName
>>> referenced by servCrunx.c
>>>               libblatSrc_la-servCrunx.o:(_makeTempName) in archive ../gbtools/.libs/libgbtools.a

ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all
errors)
c++: error: linker command failed with exit code 1 (use -v to see invocation)

http://package18.nyi.freebsd.org/data/headamd64PR230355-default/2018-08-11_19h01m06s/logs/errors/seqtools-4.44.1_2.log


Referenced Bugs:

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=230355
[Bug 230355] [exp-run] Against projects/clang700-import branch
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