[Bug 214830] math/pdal: update to 1.3.0

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=214830

            Bug ID: 214830
           Summary: math/pdal: update to 1.3.0
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs at FreeBSD.org
          Reporter: lbartoletti at tuxfamily.org
 Attachment #177392 maintainer-approval+
             Flags:
             Flags: maintainer-feedback+, merge-quarterly?

Created attachment 177392
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=177392&action=edit
Update pdal to 1.3.0

Update math/pdal to 1.3.0

Poudriere 9, 10, 11 i386/amd64
portlint ok

Merge quarterly because pdal 1.1.0 doesn't build. (Seem a problem with new
gtiff version)


Changes of Note:

    Command line parsing has been reworked to cause invalid options to emit an
error message. Stage options specified in pipelines and on the command line are
handled similarly.
    The dimension PlatformHeading has been renamed to Azimuth. When looking up
a dimension by name, the string "platformheading" is still accepted and returns
Azimuth.
    Errors detected by GDAL are no longer thrown as exceptions. A log message
is emitted instead.
    Well-known dimensions are now added to PDAL by editing a JSON file,
Dimension.json.
    Linking with PDAL using CMake no longer requires explicit linking with
curl, jsoncpp or arbiter libraries.
    PDAL now searches for plugins in the following locations and order by
default: ./lib, ../lib, ../bin, the location where PDAL was installed.
    The '--debug' and '--verbose' options are no longer supported as stage
options. The '--verbose' option is accepted on the PDAL command line. The
'--debug' option is deprecated, and if specified on the command line is
equivalent to '--verbose=3'. One can enable logging programmatically by calling
setLog() on a PipelineManager or a specific stage.
    pdal::Dimension types are now C++11 enumeration classes. The change may
require editing any Stage implementations you might have and removing the
extraneous ::Enum type specification.

Enhancements:

    Pipelines can now be read directly from standard input.
    Files can now be read from Amazon S3 buckets by providing an appropriate
URL.
    Many new filters have been added: filters.approximatecoplanar,
filters.eigenvalues, filters.estimaterank, filters.hag, filters.normal,
filters.outlier, filters.pmf, filters.sample. Most of these are algorithm
extractions from the PCL library, with the hope of eliminating the need for PCL
in some future PDAL release.
    The PLY reader now loads dimensions that aren't predefined PDAL dimensions.
    A '--driver' option has been added to allow a specific driver to be loaded
for a file without regard to its extension.
    The PDAL_DRIVER_PATH environment variable now accepts a list of locations
to search for drivers.
    Beta release quality drivers improvements in readers.greyhound
    Beta quality implementation of Mongus and Zalik ground filter
    Experimental implementation of Pingel et al. ground filter
    writers.pcd enhancements by Logan Byers (binary, compression) -- requires
PCL
    Docker images upgraded to Ubuntu Xenial
    Cyclone PTS reader -- readers.pts
    skewness, kurtosis, stddev, and variance added to filters.stats output
    Python API now available https://pypi.python.org/pypi/pdal

Fixes:

    A failure that may have resulted when using filters.hexbin to calculate
density in the southern hemisphere has been corrected.
    A failure to create the index file with 'pdal tindex' and GDAL 2.X has been
fixed.
    The '--tindex' option for the 'pdal tindex' command is now a positional
option as specified in the documentation.
    The icebridge reader now reads the X dimension as longitude and forces the
value in the range (-180, 180]. It also properly uses the dimension Azimuth
instead of ScanAngleRank.
    An error in writers.pgpointcloud where it ignored SQL to be run at the end
of the stage has been fixed.
    An error that might incorrectly write values stored internally as bytes
when written as a different data type has been fixed.
    A problem where 'pdal info' wouldn't properly report dimension names not
predefined by PDAL has been fixed.
    A bug in filters.crop that wouldn't properly transform coordinates when
provided the '--a_srs' option has been fixed.

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