[Bug 208044] [NEW PORT] biology/trimmomatic: Flexible read trimming tool for Illumina NGS data

bugzilla-noreply at freebsd.org bugzilla-noreply at freebsd.org
Tue Mar 15 21:14:23 UTC 2016


https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=208044

            Bug ID: 208044
           Summary: [NEW PORT] biology/trimmomatic: Flexible read trimming
                    tool for Illumina NGS data
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs at FreeBSD.org
          Reporter: bacon4000 at gmail.com

Created attachment 168257
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=168257&action=edit
Shar archive

Trimmomatic performs a variety of useful trimming tasks for illumina
NGS paired-end and single ended data.

WWW: http://www.usadellab.org/cms/?page=trimmomatic

2nd last dependency for Trinity pipeline.

portlint: OK (looks fine.)
testport: OK (poudriere: {10.1,9.3}-RELEASE {amd64,i386})

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