[Bug 207908] [NEW PORT] biology/bowtie2: Ultrafast, memory-efficient short read aligner

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=207908

            Bug ID: 207908
           Summary: [NEW PORT] biology/bowtie2: Ultrafast,
                    memory-efficient short read aligner
           Product: Ports & Packages
           Version: Latest
          Hardware: amd64
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs at FreeBSD.org
          Reporter: bacon4000 at gmail.com

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.

This is Bowtie version 2, which will need to coexists with Bowtie 1 for the
foreseeable future.  Both are required by certain genomics pipelines, in some
cases (e.g. Trinity) by the same pipeline.

portlint: OK (looks fine.)
testport: OK (poudriere: 9.3, 10.1 amd64 (does not run on 32-bit processors))

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