[Bug 204525] math/jags: update to 4.0.0

bugzilla-noreply at freebsd.org bugzilla-noreply at freebsd.org
Fri Nov 13 17:13:04 UTC 2015


https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=204525

            Bug ID: 204525
           Summary: math/jags: update to 4.0.0
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: bf at FreeBSD.org
          Reporter: rhurlin at gwdg.de
             Flags: maintainer-feedback?(bf at FreeBSD.org)
          Assignee: bf at FreeBSD.org

Created attachment 163100
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=163100&action=edit
patch to update math/jags to 4.0.0

Update for math/jags from 3.0.4 to 4.0.0, because math/R's package 'rjags' [1]
needs mcmc-jags version 4.x.x.

R's package rjags seems to work only, if math/jags was build via gcc instead of
clang.

[1] http://ftp5.gwdg.de/pub/misc/cran/web/packages/rjags/index.html


Probably this PR is not ready, some issues seems to be left:

portlint -AC complains about
WARN: Makefile: [58]: IGNORE messages should begin with a lowercase letter and
end without a period.
WARN: Makefile: [88]: possible direct use of command "install" found. use
${INSTALL_foobaa} instead.
WARN: Makefile: "DIST_SUBDIR" has to appear earlier.


I was not able to test via poudriere, because there are problems ATM with
building poudriere jails itself(?) On my box (recent HEAD) rjags-4.4 works just
fine with math/jags (4.0.0).

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