[Bug 204018] net/chrony: Pass --prefix to ./configure (Make PREFIX safe)

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=204018

--- Comment #8 from Kubilay Kocak <koobs at FreeBSD.org> ---
(In reply to John Hein from comment #2)

Just to clarify, I wasn't suggesting switching to GNU_CONFIGURE (as i checked
the script and confimed it wasnt entirely^W at all gnu-compatible). I just
meant that the things that 'are' passed by default 'when' GNU_CONFIGURE is set,
could be useful to use in you HAS_CONFIGURE case, in this case --prefix :)

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