ports/179224: biology/phylip: Update to version 3.695

[KATO Tsuguru]

>Number:         179224
>Category:       ports
>Synopsis:       biology/phylip: Update to version 3.695
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sun Jun 02 18:10:06 UTC 2013
>Closed-Date:
>Last-Modified:
>Originator:     KATO Tsuguru
>Release:        FreeBSD 8.4-RELEASE i386
>Organization:
>Environment:
>Description:
- Update to version 3.695

>How-To-Repeat:
>Fix:

diff -urN /usr/ports/biology/phylip/Makefile biology/phylip/Makefile
--- /usr/ports/biology/phylip/Makefile	2012-11-08 06:52:55.000000000 +0900
+++ biology/phylip/Makefile	2013-06-03 00:00:00.000000000 +0900
@@ -1,42 +1,54 @@
-# New ports collection makefile for:	phylip
-# Date created:				4 July 2000
-# Whom:					dbader at eece.unm.edu
-#
+# Created by: dbader at eece.unm.edu
 # $FreeBSD: head/biology/phylip/Makefile 300895 2012-07-14 12:56:14Z beat $
-#
 
 PORTNAME=	phylip
-PORTVERSION=	3.69
+PORTVERSION=	3.695
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://evolution.gs.washington.edu/phylip/download/
 
 MAINTAINER=	ports at FreeBSD.org
-COMMENT=	A Phylogeny Inference Package
+COMMENT=	Phylogeny Inference Package
 
 BUILD_DEPENDS=	bash:${PORTSDIR}/shells/bash
 
-BUILD_WRKSRC=	${WRKSRC}/src
-INSTALL_WRKSRC=	${WRKSRC}/src
+OPTIONS_DEFINE=	DOCS EXAMPLES
+
+BUILD_WRKSRC=	${WRKSRC}/source
+INSTALL_WRKSRC=	${WRKSRC}/source
 
 USE_XORG=	x11 xaw xt
 USE_GMAKE=	yes
-MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}" \
+MAKEFILE=	Makefile.unx
+MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \
 		DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \
 		DLIBS="-L${LOCALBASE}/lib -lX11 -lXaw -lXt -lm"
+MAKE_JOBS_SAFE=	yes
 
 PORTDOCS=	*
+PORTEXAMPLES=	*
+
+.include <bsd.port.options.mk>
 
 post-install:
 	@cd ${WRKSRC}/exe && \
-		${FIND} . -not -type d -not -name 'font*' -exec ${INSTALL_PROGRAM} "{}" "${PREFIX}/bin/{}" \;
-	${MKDIR} ${DATADIR}
+		${FIND} . -maxdepth 1 -not -type d -not -name '*.jar' \
+		-not -name '*.unx' -not -name 'font*' -not -name '*.so' \
+		-exec ${INSTALL_PROGRAM} "{}" "${PREFIX}/bin/{}" \;
 	@cd ${WRKSRC}/exe && \
-		${FIND} . -not -type d -name 'font*' -exec ${INSTALL_DATA} "{}" "${DATADIR}/{}" \;
-.if !defined(NOPORTDOCS)
-	${MKDIR} ${DOCSDIR}
-	@cd ${WRKSRC}/doc && \
-		${FIND} . -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \;
+		${FIND} . -maxdepth 1 -not -type d -name "*.so" \
+		-exec ${INSTALL_DATA} "{}" "${PREFIX}/lib/{}" \;
+	@${MKDIR} ${DATADIR}
+	@cd ${WRKSRC}/exe && \
+		${FIND} . -maxdepth 1 -not -type d -name 'font*' \
+		-exec ${INSTALL_DATA} "{}" "${DATADIR}/{}" \;
+.if ${PORT_OPTIONS:MDOCS}
+	@${MKDIR} ${DOCSDIR}
+	@(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${DOCSDIR})
+.endif
+.if ${PORT_OPTIONS:MEXAMPLES}
+	@${MKDIR} ${EXAMPLESDIR}
+	@(cd ${WRKSRC}/exe && ${COPYTREE_SHARE} testdata ${EXAMPLESDIR})
 .endif
 
 .include <bsd.port.mk>
diff -urN /usr/ports/biology/phylip/distinfo biology/phylip/distinfo
--- /usr/ports/biology/phylip/distinfo	2012-11-08 06:52:55.000000000 +0900
+++ biology/phylip/distinfo	2013-06-03 00:00:00.000000000 +0900
@@ -1,2 +1,2 @@
-SHA256 (phylip-3.69.tar.gz) = 27947ce8dab4416e4823db38b3d1b0bf17bc545b6907cf09dcf6177df94c1a8f
-SIZE (phylip-3.69.tar.gz) = 1511935
+SHA256 (phylip-3.695.tar.gz) = 846b9acf5f9d30520f703c6541ec945378b1c9355bc3f035e0ea721931b7b8ac
+SIZE (phylip-3.695.tar.gz) = 4364943
diff -urN /usr/ports/biology/phylip/pkg-plist biology/phylip/pkg-plist
--- /usr/ports/biology/phylip/pkg-plist	2012-11-08 06:52:55.000000000 +0900
+++ biology/phylip/pkg-plist	2013-06-03 00:00:00.000000000 +0900
@@ -33,6 +33,8 @@
 bin/retree
 bin/seqboot
 bin/treedist
+lib/libdrawgram.so
+lib/libdrawtree.so
 %%DATADIR%%/font1
 %%DATADIR%%/font2
 %%DATADIR%%/font3
>Release-Note:
>Audit-Trail:
>Unformatted: