ports/143859: [NEW PORT] science/hdf-java Java interface to HDF5

Sat Feb 13 07:20:03 UTC 2010

>Number:         143859
>Category:       ports
>Synopsis:       [NEW PORT] science/hdf-java Java interface to HDF5
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sat Feb 13 07:20:03 UTC 2010
>Closed-Date:
>Last-Modified:
>Originator:     Rob Farmer
>Release:        9.0-CURRENT
>Organization:
>Environment:
FreeBSD coretwo.predatorlabs.net 9.0-CURRENT FreeBSD 9.0-CURRENT #0 r203695: Tue Feb  9 03:02:13 PST 2010     rfarmer at coretwo.predatorlabs.net:/usr/obj/usr/src/sys/CORETWO  amd64
>Description:
The HDF Java Products include a visual tool for browsing and editing HDF
files, a Java package providing an object-oriented interface to HDF data
objects, and Java Native Interfaces to the standard HDF libraries.

WWW: http://www.hdfgroup.org/hdf-java-html/index.html

>How-To-Repeat:

>Fix:

Patch attached with submission follows:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	hdf-java
#	hdf-java/pkg-descr
#	hdf-java/pkg-plist
#	hdf-java/Makefile
#	hdf-java/distinfo
#
echo c - hdf-java
mkdir -p hdf-java > /dev/null 2>&1
echo x - hdf-java/pkg-descr
sed 's/^X//' >hdf-java/pkg-descr << 'e3a1d8753610e349d3324955aa9bd71a'
XThe HDF Java Products include a visual tool for browsing and editing HDF
Xfiles, a Java package providing an object-oriented interface to HDF data
Xobjects, and Java Native Interfaces to the standard HDF libraries.
X
XWWW: http://www.hdfgroup.org/hdf-java-html/index.html
e3a1d8753610e349d3324955aa9bd71a
echo x - hdf-java/pkg-plist
sed 's/^X//' >hdf-java/pkg-plist << '5d9956d905c1e628e20849bf4028cb1c'
Xbin/hdfview.sh
Xlib/libjhdf5.so
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/chart_histogram.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/chart_line.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/class_diagram_object.jpg
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_2d.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_3d.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_compound.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_compound_2d.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_open_as.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_reorder.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_compound.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_example1.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_example2.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_example3.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_subset_nested.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_text.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/dataset_transpose.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/design_components.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/file_manager.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/hdf-obj.jpg
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/hdfview.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_chart.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_dataset.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_folderclose.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_folderopen.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_hdf4.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_hdf5.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_image.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/icon_table.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/image_contour.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/image_indexed_mapping.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/image_palette.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/image_palette_modify.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/image_true_color.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/menu_file.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/menu_help.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/menu_image.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/menu_option.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/menu_option_addfileformat.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/menu_popup.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/menu_window.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/module_add_fileformat.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/module_defaults.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/module_select_imageview.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/module_select_tableview.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_attribute.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_dataset.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_file.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_group.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/new_image.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_attribute.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_general_dataset.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_general_group.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/property_userblock.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/save_as_text.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/images/tree_view.gif
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/index.html
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug01introduction.html
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug02start.html
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug03objects.html
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug04treeview.html
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug05spreadsheet.html
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug06imageview.html
X%%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug07textview.html
Xshare/java/classes/ext/fitsobj.jar
Xshare/java/classes/ext/nc2obj.jar
Xshare/java/classes/fits.jar
Xshare/java/classes/jhdf5.jar
Xshare/java/classes/jhdf5obj.jar
Xshare/java/classes/jhdfobj.jar
Xshare/java/classes/jhdfview.jar
Xshare/java/classes/junit.jar
Xshare/java/classes/netcdf.jar
X at dirrm share/java/classes/ext
X%%PORTDOCS%%@dirrm %%DOCSDIR%%/UsersGuide/images
X%%PORTDOCS%%@dirrm %%DOCSDIR%%/UsersGuide
X%%PORTDOCS%%@dirrm %%DOCSDIR%%
X at dirrm UsersGuide
X at exec mkdir -p %D/UsersGuide
5d9956d905c1e628e20849bf4028cb1c
echo x - hdf-java/Makefile
sed 's/^X//' >hdf-java/Makefile << 'aa5c624e5c7e80040408335868d3df48'
X# New ports collection makefile for:	hdf-java
X# Date created:				11 February 2010
X# Whom:					rfarmer at predatorlabs.net
X#
X# $FreeBSD$
X#
X
XPORTNAME=	hdf-java
XPORTVERSION=	2.6
XCATEGORIES=	science java
XMASTER_SITES=	http://www.hdfgroup.org/ftp/HDF5/hdf-java/src/ \
X		http://www.predatorlabs.net/dl/
XEXTRACT_SUFX=	-src.tar
X
XMAINTAINER=	rfarmer at predatorlabs.net
XCOMMENT=	Java interface to HDF5
X
XLIB_DEPENDS=	hdf5.6:${PORTSDIR}/science/hdf5-18
X
XUSE_JAVA=	yes
XJAVA_VERSION=	1.5+
XJAVA_BUILD=	yes
XJAVA_RUN=	yes
X
XGNU_CONFIGURE=	yes
XCONFIGURE_ARGS=	--with-jdk=${JAVA_HOME}/include,${JAVA_HOME}/jre/lib/ \
X		--with-hdf5=${LOCALBASE}/include \
X		--with-libz=/lib
X
XWRKSRC=		${WRKDIR}/${PORTNAME}
X
Xpost-patch:
X	${REINPLACE_CMD} -e 's|"/libhdf.$$LLEXT"|"${LOCALBASE}/lib"|' ${WRKSRC}/configure
X	${REINPLACE_CMD} -e 's|$$z_lib"/libz."$$LLEXT|"/lib/libz.so.*"|' ${WRKSRC}/configure
X	${REINPLACE_CMD} -e 's|LLEXT="a"|LLEXT="so"|g' ${WRKSRC}/configure
X	${REINPLACE_CMD} -e 's|COPT="-shared"|COPT="-fPIC"|g' ${WRKSRC}/configure
X	#${REINPLACE_CMD} -e 's|$$(JH45INSTALLDIR)/UsersGuide|${DOCSDIR}/UsersGuide|' ${WRKSRC}/Makefile.in
X	${REINPLACE_CMD} -e 's|$$(JH45INSTALLDIR)/lib|${JAVAJARDIR}|' ${WRKSRC}/Makefile.in
X	${REINPLACE_CMD} -e 's|$$(LIBDIR)/@JAVATARG@|${PREFIX}/lib|g' ${WRKSRC}/Makefile.in
X	${REINPLACE_CMD} -e 's|cp -R|#|' ${WRKSRC}/Makefile.in
X	${REINPLACE_CMD} -e 's|cp ./lib/@JAVATARG@|${INSTALL_PROGRAM} ./lib/@JAVATARG@|g' ${WRKSRC}/Makefile.in
X	${REINPLACE_CMD} -e 's|cp |${INSTALL_DATA} |g' ${WRKSRC}/Makefile.in
X
Xpost-install:
X.if !defined(NOPORTDOCS)
X	${MKDIR} ${DOCSDIR}/UsersGuide
X	(cd ${WRKSRC}/docs/hdfview/ && ${COPYTREE_SHARE} "UsersGuide" ${DOCSDIR}/)
X.endif
X
X.include <bsd.port.mk>
aa5c624e5c7e80040408335868d3df48
echo x - hdf-java/distinfo
sed 's/^X//' >hdf-java/distinfo << 'bc4f65fe27c8f8fdd12b1dbf152f8bc2'
XMD5 (hdf-java-2.6-src.tar) = f0be0c568d7f308c72ccb63c87e8e32d
XSHA256 (hdf-java-2.6-src.tar) = d2756ab58449a11cf765276d19bb8b804e809ca702b569fd4d4d94794f359481
XSIZE (hdf-java-2.6-src.tar) = 10383360
bc4f65fe27c8f8fdd12b1dbf152f8bc2
exit

>Release-Note:
>Audit-Trail:
>Unformatted: