ports/153400: [patch] science/hdf5-18 Update to 1.8.5 patch 1

Rob Farmer rfarmer at predatorlabs.net
Thu Dec 23 10:20:09 UTC 2010 

>Number:         153400
>Category:       ports
>Synopsis:       [patch] science/hdf5-18 Update to 1.8.5 patch 1
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Thu Dec 23 10:20:09 UTC 2010
>Closed-Date:
>Last-Modified:
>Originator:     Rob Farmer
>Release:        9.0-CURRENT
>Organization:
>Environment:
FreeBSD thinkpad.predatorlabs.net 9.0-CURRENT FreeBSD 9.0-CURRENT #0 r216634M: Tue Dec 21 20:13:42 PST 2010     rfarmer at thinkpad.predatorlabs.net:/usr/obj/usr/src/sys/THINKPAD  amd64
>Description:
-Update to 1.8.5 patch 1
-Fix fetch
-Make --disable-debug conditional

Note: perhaps the PORTVERSION should include the patch level? But it hasn't in the past so I left it out.

>How-To-Repeat:

>Fix:


Patch attached with submission follows:

Index: Makefile
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/Makefile,v
retrieving revision 1.58
diff -u -r1.58 Makefile
--- Makefile	4 May 2010 17:50:41 -0000	1.58
+++ Makefile	23 Dec 2010 06:35:25 -0000
@@ -6,10 +6,10 @@
 #
 
 PORTNAME=	hdf5
-PORTVERSION=	1.8.4
+PORTVERSION=	1.8.5
 CATEGORIES=	science archivers graphics
 MASTER_SITES=	ftp://ftp.hdfgroup.org/HDF5/current/src/ \
-		ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-1.8.4/src/
+		ftp://ftp.hdfgroup.org/HDF5/prev-releases/${PORTNAME}-${PORTVERSION}-patch1/src/
 DISTNAME=	${PORTNAME}-${PORTVERSION}-patch1
 
 MAINTAINER=	koziol at hdfgroup.org
@@ -21,10 +21,8 @@
 USE_BZIP2=	yes
 USE_LDCONFIG=	yes
 GNU_CONFIGURE=	yes
-CONFIGURE_ARGS=	--disable-debug \
-		--enable-cxx \
+CONFIGURE_ARGS=	--enable-cxx \
 		--enable-instrument \
-		--enable-production \
 		--enable-strict-format-checks \
 		--with-pthread=/usr \
 		--with-zlib=/usr
@@ -34,6 +32,12 @@
 
 .include <bsd.port.pre.mk>
 
+.if !defined(WITH_DEBUG)
+CONFIGURE_ARGS+=	--disable-debug
+.else
+CONFIGURE_ARGS+=	--enable-production
+.endif
+
 .if defined(WITH_FORTRAN)
 USE_FORTRAN=		yes
 CONFIGURE_ENV+=		F9X=${FC}
@@ -55,6 +59,8 @@
 post-patch:
 	@${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
 	@${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags
+	@${REINPLACE_CMD} -e 's|perform examples|perform|' ${WRKSRC}/Makefile.in
+	@${REINPLACE_CMD} -e 's|install-recursive install-examples|install-recursive|' ${WRKSRC}/Makefile.in
 
 post-install:
 .if !defined(NOPORTEXAMPLES)
Index: distinfo
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/distinfo,v
retrieving revision 1.22
diff -u -r1.22 distinfo
--- distinfo	4 May 2010 17:50:41 -0000	1.22
+++ distinfo	23 Dec 2010 01:52:30 -0000
@@ -1,3 +1,2 @@
-MD5 (hdf5-1.8.4-patch1.tar.bz2) = b19f4dfbf654a2af3653c492fc1c7513
-SHA256 (hdf5-1.8.4-patch1.tar.bz2) = 818b9f7ff767e9760d0c8aa0abc16ad20e616cfaab760dd3b18ead67326a3f18
-SIZE (hdf5-1.8.4-patch1.tar.bz2) = 5251124
+SHA256 (hdf5-1.8.5-patch1.tar.bz2) = 1028be671e24dcd9826d3eabe6c0ebe674282368689dcf0f6bb5926bc8d3be25
+SIZE (hdf5-1.8.5-patch1.tar.bz2) = 5413471
Index: pkg-plist
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/pkg-plist,v
retrieving revision 1.26
diff -u -r1.26 pkg-plist
--- pkg-plist	4 May 2010 18:19:52 -0000	1.26
+++ pkg-plist	23 Dec 2010 03:48:24 -0000
@@ -1,11 +1,8 @@
-bin/h5mkgrp
-bin/h5copy
-bin/h5stat
-bin/h5perf_serial
 bin/gif2h5
 bin/h52gif
 bin/h5c++
 bin/h5cc
+bin/h5copy
 bin/h5debug
 bin/h5diff
 bin/h5dump
@@ -13,11 +10,13 @@
 bin/h5import
 bin/h5jam
 bin/h5ls
+bin/h5mkgrp
+bin/h5perf_serial
 bin/h5redeploy
 bin/h5repack
 bin/h5repart
+bin/h5stat
 bin/h5unjam
-include/hdf5_hl.h
 include/H5ACpublic.h
 include/H5AbstractDs.h
 include/H5Apublic.h
@@ -30,12 +29,12 @@
 include/H5Cpp.h
 include/H5CppDoc.h
 include/H5Cpublic.h
+include/H5DSpublic.h
 include/H5DataSet.h
 include/H5DataSpace.h
 include/H5DataType.h
 include/H5DcreatProp.h
 include/H5Dpublic.h
-include/H5DSpublic.h
 include/H5DxferProp.h
 include/H5EnumType.h
 include/H5Epubgen.h
@@ -59,13 +58,13 @@
 include/H5Fpublic.h
 include/H5Gpublic.h
 include/H5Group.h
-include/H5IdComponent.h
 include/H5IMpublic.h
+include/H5IdComponent.h
 include/H5Include.h
 include/H5IntType.h
 include/H5Ipublic.h
-include/H5Library.h
 include/H5LTpublic.h
+include/H5Library.h
 include/H5Lpublic.h
 include/H5MMpublic.h
 include/H5Object.h
@@ -83,45 +82,35 @@
 include/H5VarLenType.h
 include/H5Zpublic.h
 include/H5api_adpt.h
+%%FORTRAN%%include/H5f90i.h
+%%FORTRAN%%include/H5f90i_gen.h
 include/H5overflow.h
 include/H5pubconf.h
 include/H5public.h
 include/H5version.h
-include/hdf5.h
+%%FORTRAN%%include/h5_dble_interface.mod
 %%FORTRAN%%include/h5a.mod
 %%FORTRAN%%include/h5d.mod
 %%FORTRAN%%include/h5e.mod
 %%FORTRAN%%include/h5f.mod
-%%FORTRAN%%include/h5fortran_flags.mod
 %%FORTRAN%%include/h5fortran_types.mod
 %%FORTRAN%%include/h5g.mod
 %%FORTRAN%%include/h5global.mod
 %%FORTRAN%%include/h5i.mod
+%%FORTRAN%%include/h5im.mod
+%%FORTRAN%%include/h5l.mod
 %%FORTRAN%%include/h5lib.mod
+%%FORTRAN%%include/h5lt.mod
+%%FORTRAN%%include/h5o.mod
 %%FORTRAN%%include/h5p.mod
 %%FORTRAN%%include/h5r.mod
 %%FORTRAN%%include/h5s.mod
 %%FORTRAN%%include/h5t.mod
+%%FORTRAN%%include/h5tb.mod
 %%FORTRAN%%include/h5z.mod
+include/hdf5.h
 %%FORTRAN%%include/hdf5.mod
-%%FORTRAN%%include/h5_dble_interface.mod
-%%FORTRAN%%include/h5o.mod
-%%FORTRAN%%include/h5l.mod
-%%FORTRAN%%include/h5tb.mod
-%%FORTRAN%%include/h5lt.mod
-%%FORTRAN%%include/h5im.mod
-%%FORTRAN%%lib/libhdf5_fortran.so
-%%FORTRAN%%lib/libhdf5_fortran.so.0
-%%FORTRAN%%lib/libhdf5hl_fortran.so
-%%FORTRAN%%lib/libhdf5hl_fortran.so.0
-%%FORTRAN%%lib/libhdf5hl_fortran.la
-%%FORTRAN%%lib/libhdf5hl_fortran.a
-lib/libhdf5_cpp.so
-lib/libhdf5_cpp.so.6
-lib/libhdf5_hl_cpp.so
-lib/libhdf5_hl_cpp.so.6
-lib/libhdf5_hl_cpp.la
-lib/libhdf5_hl_cpp.a
+include/hdf5_hl.h
 lib/libhdf5.a
 lib/libhdf5.la
 lib/libhdf5.settings
@@ -129,13 +118,26 @@
 lib/libhdf5.so.6
 lib/libhdf5_cpp.a
 lib/libhdf5_cpp.la
+lib/libhdf5_cpp.so
+lib/libhdf5_cpp.so.6
 %%FORTRAN%%lib/libhdf5_fortran.a
 %%FORTRAN%%lib/libhdf5_fortran.la
+%%FORTRAN%%lib/libhdf5_fortran.so
+%%FORTRAN%%lib/libhdf5_fortran.so.6
 lib/libhdf5_hl.a
 lib/libhdf5_hl.la
 lib/libhdf5_hl.so
 lib/libhdf5_hl.so.6
+lib/libhdf5_hl_cpp.a
+lib/libhdf5_hl_cpp.la
+lib/libhdf5_hl_cpp.so
+lib/libhdf5_hl_cpp.so.6
+%%FORTRAN%%lib/libhdf5hl_fortran.a
+%%FORTRAN%%lib/libhdf5hl_fortran.la
+%%FORTRAN%%lib/libhdf5hl_fortran.so
+%%FORTRAN%%lib/libhdf5hl_fortran.so.6
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/Attributes.txt
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/CMakeLists.txt
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/Makefile
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/Makefile.am
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/Makefile.in
@@ -157,6 +159,9 @@
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/h5_shared_mesg.c
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/h5_write.c
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ph5example.c
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/run-all-ex.sh
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/run-c-ex.sh
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/run-c-ex.sh.in
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testh5cc.sh
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testh5cc.sh.in
 %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%


>Release-Note:
>Audit-Trail:
>Unformatted:

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