ports/132659: [Maintainer Update]biology/p5-Bio-Graphics:update to 1.90
Wen heping
wenheping at gmail.com
Sun Mar 15 13:50:01 UTC 2009
>Number: 132659
>Category: ports
>Synopsis: [Maintainer Update]biology/p5-Bio-Graphics:update to 1.90
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: maintainer-update
>Submitter-Id: current-users
>Arrival-Date: Sun Mar 15 13:50:00 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator: Wen heping
>Release: FreeBSD 8.0-CURRENT
>Organization:
ChangAn Middle School
>Environment:
FreeBSD fb8.wenjing.com 8.0-CURRENT-200811 FreeBSD 8.0-CURRENT-200811 #0: Thu Nov 6 00:32:12 UTC 2008 root at almeida.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386
>Description:
1 update to 1.90 from 1.84
2 it require:
http://www.freebsd.org/cgi/query-pr.cgi?pr=132657
http://www.freebsd.org/cgi/query-pr.cgi?pr=132656
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
--- Makefile.orig 2009-03-15 12:59:05.000000000 +0800
+++ Makefile 2009-03-15 20:47:23.000000000 +0800
@@ -6,7 +6,7 @@
#
PORTNAME= Bio-Graphics
-PORTVERSION= 1.84
+PORTVERSION= 1.90
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
@@ -15,9 +15,10 @@
COMMENT= Generate GD Images of Bio::Seq Objects
BUILD_DEPENDS= p5-GD>=2.3:${PORTSDIR}/graphics/p5-GD \
- p5-GD-SVG>=0:${PORTSDIR}/graphics/p5-GD-SVG \
+ p5-GD-SVG>=0.32:${PORTSDIR}/graphics/p5-GD-SVG \
+ p5-Statistics-Descriptive>=2.6:${PORTSDIR}/math/p5-Statistics-Descriptive \
p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl \
- p5-Text-ParseWords>=0:${PORTSDIR}/textproc/p5-Text-ParseWords \
+ p5-Text-ParseWords>=3.26:${PORTSDIR}/textproc/p5-Text-ParseWords \
p5-ExtUtils-MakeMaker>=0:${PORTSDIR}/devel/p5-ExtUtils-MakeMaker
RUN_DEPENDS= ${BUILD_DEPENDS}
@@ -62,6 +63,7 @@
Bio::Graphics::Glyph::heat_map.3 \
Bio::Graphics::Glyph::heat_map_ideogram.3 \
Bio::Graphics::Glyph::heterogeneous_segments.3 \
+ Bio::Graphics::Glyph::hybrid_plot.3 \
Bio::Graphics::Glyph::ideogram.3 \
Bio::Graphics::Glyph::image.3 \
Bio::Graphics::Glyph::lightning.3 \
--- distinfo.orig 2009-03-15 12:59:05.000000000 +0800
+++ distinfo 2009-03-15 19:25:35.000000000 +0800
@@ -1,3 +1,3 @@
-MD5 (Bio-Graphics-1.84.tar.gz) = ff4e72484d345d5d711b80606426faff
-SHA256 (Bio-Graphics-1.84.tar.gz) = f255268a98fee1bdc8a4e5be4802ff3fd7e1c47c6a6eb76c9ec651425b9e6caa
-SIZE (Bio-Graphics-1.84.tar.gz) = 553114
+MD5 (Bio-Graphics-1.90.tar.gz) = 2045021e033b6ac9408478c0e45f3eda
+SHA256 (Bio-Graphics-1.90.tar.gz) = 3db374f1af646d0c9a39570fda4113319810fddd9d04027489d273aa34308517
+SIZE (Bio-Graphics-1.90.tar.gz) = 559552
--- pkg-plist.orig 2009-03-15 12:59:05.000000000 +0800
+++ pkg-plist 2009-03-15 12:59:05.000000000 +0800
@@ -8,6 +8,7 @@
%%SITE_PERL%%/Bio/Graphics/Glyph/spectrogram.pm
%%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm
%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm
+%%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm
%%SITE_PERL%%/Bio/Graphics/Glyph/smoothing.pm
%%SITE_PERL%%/Bio/Graphics/Glyph/stackedplot.pm
%%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm
>Release-Note:
>Audit-Trail:
>Unformatted:
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