ports/137652: [Maintainer Update]biology/libsbml:update to 3.4.1

[Wen Heping]

>Number:         137652
>Category:       ports
>Synopsis:       [Maintainer Update]biology/libsbml:update to 3.4.1
>Confidential:   no
>Severity:       non-critical
>Priority:       medium
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Aug 11 02:10:01 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator:     Wen Heping
>Release:        FreeBSD 8.0-Current
>Organization:
ChangAn Middle School
>Environment:
FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #4: Fri Apr 10 16:36:28 HKT 2009     root at fb8.wenjing.com:/usr/obj/usr/src/sys/wen1  i386
>Description:
update to 3.4.1 from 3.3.2
fix the build error with CUSTOM PREFIX
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

diff -urN libsbml/Makefile libsbml.new/Makefile
--- libsbml/Makefile	2009-05-29 07:36:10.000000000 +0800
+++ libsbml.new/Makefile	2009-08-11 17:34:38.000000000 +0800
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	libsbml
-PORTVERSION=	3.3.2
+PORTVERSION=	3.4.1
 CATEGORIES=	biology devel
 MASTER_SITES=	SF
 MASTER_SITE_SUBDIR=	sbml
@@ -15,6 +15,7 @@
 MAINTAINER=	wenheping at gmail.com
 COMMENT=	An API Library for Working with SBML File
 
+FETCH_ARGS=	-Rr
 LIB_DEPENDS=	xml2.5:${PORTSDIR}/textproc/libxml2
 
 OPTIONS=	PYTHON "Support for Python" off \
@@ -46,6 +47,10 @@
 PLIST_SUB+=		WITH_RUBY="@comment "
 .endif
 
+post-patch:
+	${REINPLACE_CMD} -e 's#%%PREFIX%%#${PREFIX}#' \
+		${WRKSRC}/Makefile.in
+
 post-install:
 .if !defined(NOPORTEXAMPLES)
 	${MKDIR} ${EXAMPLESDIR}
diff -urN libsbml/distinfo libsbml.new/distinfo
--- libsbml/distinfo	2009-05-27 22:20:43.000000000 +0800
+++ libsbml.new/distinfo	2009-08-11 17:34:38.000000000 +0800
@@ -1,3 +1,3 @@
-MD5 (libsbml-3.3.2-src.zip) = f8b3ff297848f8cf0918c065f8a65133
-SHA256 (libsbml-3.3.2-src.zip) = 5ebd8a57679fda954032e44111fdbcb8dc8598037354962d82a1742b621505d4
-SIZE (libsbml-3.3.2-src.zip) = 7076694
+MD5 (libsbml-3.4.1-src.zip) = dc6b963e9437a0dce95df51cb8dcdcc2
+SHA256 (libsbml-3.4.1-src.zip) = 14c39974efa7cd218a4625ef240c888dbac63f2e5657ded9b1eb20e4c6751262
+SIZE (libsbml-3.4.1-src.zip) = 7352277
diff -urN libsbml/files/patch-Makefile.in libsbml.new/files/patch-Makefile.in
--- libsbml/files/patch-Makefile.in	2009-05-27 23:33:53.000000000 +0800
+++ libsbml.new/files/patch-Makefile.in	2009-08-11 17:34:38.000000000 +0800
@@ -5,7 +5,7 @@
  
  install-pc: libsbml.pc
 -	$(INSTALL_SH) libsbml.pc -m 0644 "$(DESTDIR)$(LIBDIR)/pkgconfig/libsbml.pc"
-+	$(INSTALL_SH) libsbml.pc -m 0644 "/usr/local/libdata/pkgconfig/libsbml.pc"
++	$(INSTALL_SH) libsbml.pc -m 0644 "%%PREFIX%%/libdata/pkgconfig/libsbml.pc"
  
  install-la: libsbml.la
  ifeq "$(HOST_TYPE)" "cygwin"
@@ -14,21 +14,21 @@
  
  uninstall-libsbml-pc:
 -	@target="$(DESTDIR)$(LIBDIR)/pkgconfig/libsbml.pc"; \
-+	@target="/usr/local/libdata/pkgconfig/libsbml.pc"; \
++	@target="%%PREFIX%%/libdata/pkgconfig/libsbml.pc"; \
  	if test -f $$target ; then \
  	  echo rm $$target; \
  	  rm $$target; \
  	fi; \
 -	if test -d "$(DESTDIR)$(LIBDIR)/pkgconfig"; then \
-+	if test -d "/usr/local/libdata/pkgconfig"; then \
++	if test -d "%%PREFIX%%/libdata/pkgconfig"; then \
  	  if test -n "`find $(DESTDIR)$(LIBDIR) -maxdepth 0 -empty`"; then \
 -	    echo rmdir "$(DESTDIR)$(LIBDIR)/pkgconfig"; \
 -	    rmdir "$(DESTDIR)$(LIBDIR)/pkgconfig"; \
-+	    echo rmdir "/usr/local/libdata/pkgconfig"; \
-+	    rmdir "/usr/local/libdata/pkgconfig"; \
++	    echo rmdir "%%PREFIX%%/libdata/pkgconfig"; \
++	    rmdir "%%PREFIX%%/libdata/pkgconfig"; \
  	  else \
 -	    echo "Directory $(DESTDIR)$(LIBDIR)/pkgconfig not empty; leaving it alone"; \
-+	    echo "Directory /usr/local/libdata/pkgconfig not empty; leaving it alone"; \
++	    echo "Directory %%PREFIX%%/libdata/pkgconfig not empty; leaving it alone"; \
  	  fi; \
  	fi;
  
diff -urN libsbml/pkg-plist libsbml.new/pkg-plist
--- libsbml/pkg-plist	2009-05-29 01:06:37.000000000 +0800
+++ libsbml.new/pkg-plist	2009-08-11 17:34:38.000000000 +0800
@@ -17,6 +17,7 @@
 include/sbml/SBMLError.h
 include/sbml/SBMLErrorLog.h
 include/sbml/SBMLErrorTable.h
+include/sbml/SBMLNamespaces.h
 include/sbml/SBMLReader.h
 include/sbml/SBMLTypeCodes.h
 include/sbml/SBMLTypes.h
@@ -110,7 +111,7 @@
 include/sbml/xml/XMLToken.h
 include/sbml/xml/XMLTokenizer.h
 include/sbml/xml/XMLTriple.h
-lib/libsbml.3.3.2.so
+lib/libsbml.3.4.1.so
 lib/libsbml.so
 lib/libsbml.a
 @dirrm include/sbml/annotation


>Release-Note:
>Audit-Trail:
>Unformatted: