ports/137618: science/avogadro: update to 0.9.7 and unbreak

Max Brazhnikov makc at FreeBSD.org
Mon Aug 10 07:20:02 UTC 2009 

>Number:         137618
>Category:       ports
>Synopsis:       science/avogadro: update to 0.9.7 and unbreak
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Mon Aug 10 07:20:01 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator:     Max Brazhnikov
>Release:        FreeBSD 7.2-STABLE i386
>Organization:
>Environment:
FreeBSD luna.dio.ru 7.2-STABLE FreeBSD 7.2-STABLE #2: Fri Jun 26 21:57:33 MSD 2009     root at luna.dio.ru:/usr/obj/usr/freebsd/7/src/sys/LUNA  i386
>Description:
update to 0.9.7
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

Index: Makefile
===================================================================
RCS file: /home/pcvs/ports/science/avogadro/Makefile,v
retrieving revision 1.5
diff -u -r1.5 Makefile
--- Makefile	9 Aug 2009 19:41:22 -0000	1.5
+++ Makefile	10 Aug 2009 07:11:21 -0000
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	avogadro
-PORTVERSION=	0.9.6
+PORTVERSION=	0.9.7
 CATEGORIES=	science
 MASTER_SITES=	SF
 
@@ -31,8 +31,6 @@
 USE_PYTHON=	2.5+
 MAKE_JOBS_SAFE=	yes
 
-BROKEN=		does not build with new py-sip
-
 .include <bsd.port.pre.mk>
 
 .if ${OSVERSION} < 700013
Index: distinfo
===================================================================
RCS file: /home/pcvs/ports/science/avogadro/distinfo,v
retrieving revision 1.3
diff -u -r1.3 distinfo
--- distinfo	7 Jun 2009 19:01:09 -0000	1.3
+++ distinfo	9 Aug 2009 19:43:24 -0000
@@ -1,3 +1,3 @@
-MD5 (avogadro-0.9.6.tar.bz2) = 4b12a8c750837e12c884ac3cb80ce766
-SHA256 (avogadro-0.9.6.tar.bz2) = 898a6f2923623852af33474aa8badc43650eb1776504936c73a28710aa885065
-SIZE (avogadro-0.9.6.tar.bz2) = 4746495
+MD5 (avogadro-0.9.7.tar.bz2) = 13234be4e2caa6017721b937a276cdd9
+SHA256 (avogadro-0.9.7.tar.bz2) = eeb694ef797a88e83332b45084570c03d0362e63064c9fe3aa7b0cadca418248
+SIZE (avogadro-0.9.7.tar.bz2) = 4731522
Index: pkg-plist
===================================================================
RCS file: /home/pcvs/ports/science/avogadro/pkg-plist,v
retrieving revision 1.3
diff -u -r1.3 pkg-plist
--- pkg-plist	7 Jun 2009 19:01:09 -0000	1.3
+++ pkg-plist	10 Aug 2009 06:56:50 -0000
@@ -9,9 +9,7 @@
 include/avogadro/elementtranslator.h
 include/avogadro/engine.h
 include/avogadro/extension.h
-include/avogadro/filetreeitem.h
 include/avogadro/fragment.h
-include/avogadro/glgraphicsview.h
 include/avogadro/glhit.h
 include/avogadro/global.h
 include/avogadro/glwidget.h
@@ -22,7 +20,6 @@
 include/avogadro/moleculefile.h
 include/avogadro/navigate.h
 include/avogadro/neighborlist.h
-include/avogadro/openbabelwrapper.h
 include/avogadro/painter.h
 include/avogadro/painterdevice.h
 include/avogadro/periodictableview.h
@@ -43,9 +40,9 @@
 include/avogadro/toolgroup.h
 include/avogadro/undosequence.h
 include/avogadro/zmatrix.h
-lib/avogadro/AvogadroConfigVersion.cmake
 lib/avogadro/AvogadroBuildSettings.cmake
 lib/avogadro/AvogadroConfig.cmake
+lib/avogadro/AvogadroConfigVersion.cmake
 lib/avogadro/AvogadroLibraryDeps.cmake
 lib/avogadro/AvogadroUse.cmake
 lib/avogadro/cmake/FindEigen2.cmake
@@ -61,7 +58,6 @@
 lib/avogadro/engines/forceengine.so
 lib/avogadro/engines/hbondengine.so
 lib/avogadro/engines/labelengine.so
-lib/avogadro/engines/orbitalengine.so
 lib/avogadro/engines/overlayengine.so
 lib/avogadro/engines/polygonengine.so
 lib/avogadro/engines/ribbonengine.so
@@ -82,13 +78,13 @@
 lib/avogadro/extensions/insertpeptideextension.so
 lib/avogadro/extensions/molecularpropextension.so
 lib/avogadro/extensions/networkfetchextension.so
-lib/avogadro/extensions/orbitalextension.so
 lib/avogadro/extensions/povrayextension.so
 lib/avogadro/extensions/propextension.so
 lib/avogadro/extensions/pythonterminal.so
 lib/avogadro/extensions/selectextension.so
 lib/avogadro/extensions/spectraextension.so
 lib/avogadro/extensions/supercellextension.so
+lib/avogadro/extensions/surfaceextension.so
 lib/avogadro/extensions/unitcellextension.so
 lib/avogadro/extensions/vibrationextension.so
 lib/avogadro/tools/aligntool.so
@@ -102,50 +98,49 @@
 lib/avogadro/tools/selectrotatetool.so
 lib/libavogadro.so
 lib/libavogadro.so.0
-lib/libavogadro.so.0.9.6
-%%PYTHON_SITELIBDIR%%/Avogadro.py
-%%PYTHON_SITELIBDIR%%/_Avogadro.so
-%%DATADIR%%/builder/amino/d-lys.zmat
-%%DATADIR%%/builder/amino/l-his.zmat
+lib/libavogadro.so.0.9.7
+%%PYTHON_SITELIBDIR%%/Avogadro.so
 %%DATADIR%%/builder/amino/d-ala.zmat
-%%DATADIR%%/builder/amino/l-leu.zmat
-%%DATADIR%%/builder/amino/d-glu.zmat
-%%DATADIR%%/builder/amino/l-pyl.zmat
+%%DATADIR%%/builder/amino/d-arg.zmat
+%%DATADIR%%/builder/amino/d-asn.zmat
+%%DATADIR%%/builder/amino/d-asp.zmat
 %%DATADIR%%/builder/amino/d-cys.zmat
-%%DATADIR%%/builder/amino/l-sec.zmat
-%%DATADIR%%/builder/amino/l-val.zmat
+%%DATADIR%%/builder/amino/d-gln.zmat
+%%DATADIR%%/builder/amino/d-glu.zmat
+%%DATADIR%%/builder/amino/d-his.zmat
+%%DATADIR%%/builder/amino/d-ile.zmat
 %%DATADIR%%/builder/amino/d-leu.zmat
-%%DATADIR%%/builder/amino/l-cys.zmat
+%%DATADIR%%/builder/amino/d-lys.zmat
+%%DATADIR%%/builder/amino/d-met.zmat
+%%DATADIR%%/builder/amino/d-phe.zmat
 %%DATADIR%%/builder/amino/d-pro.zmat
-%%DATADIR%%/builder/amino/d-arg.zmat
-%%DATADIR%%/builder/amino/l-glu.zmat
-%%DATADIR%%/builder/amino/l-met.zmat
-%%DATADIR%%/builder/amino/d-tyr.zmat
-%%DATADIR%%/builder/amino/d-val.zmat
-%%DATADIR%%/builder/amino/l-ile.zmat
-%%DATADIR%%/builder/amino/l-thr.zmat
-%%DATADIR%%/builder/amino/d-asn.zmat
-%%DATADIR%%/builder/amino/l-ala.zmat
 %%DATADIR%%/builder/amino/d-ser.zmat
-%%DATADIR%%/builder/amino/l-phe.zmat
-%%DATADIR%%/builder/amino/d-gln.zmat
 %%DATADIR%%/builder/amino/d-thr.zmat
-%%DATADIR%%/builder/amino/d-asp.zmat
 %%DATADIR%%/builder/amino/d-trp.zmat
+%%DATADIR%%/builder/amino/d-tyr.zmat
+%%DATADIR%%/builder/amino/d-val.zmat
+%%DATADIR%%/builder/amino/gly.zmat
+%%DATADIR%%/builder/amino/l-ala.zmat
 %%DATADIR%%/builder/amino/l-arg.zmat
 %%DATADIR%%/builder/amino/l-asn.zmat
 %%DATADIR%%/builder/amino/l-asp.zmat
-%%DATADIR%%/builder/amino/l-trp.zmat
-%%DATADIR%%/builder/amino/d-ile.zmat
-%%DATADIR%%/builder/amino/l-ser.zmat
-%%DATADIR%%/builder/amino/gly.zmat
-%%DATADIR%%/builder/amino/l-lys.zmat
-%%DATADIR%%/builder/amino/d-met.zmat
-%%DATADIR%%/builder/amino/d-phe.zmat
+%%DATADIR%%/builder/amino/l-cys.zmat
 %%DATADIR%%/builder/amino/l-gln.zmat
-%%DATADIR%%/builder/amino/l-tyr.zmat
+%%DATADIR%%/builder/amino/l-glu.zmat
+%%DATADIR%%/builder/amino/l-his.zmat
+%%DATADIR%%/builder/amino/l-ile.zmat
+%%DATADIR%%/builder/amino/l-leu.zmat
+%%DATADIR%%/builder/amino/l-lys.zmat
+%%DATADIR%%/builder/amino/l-met.zmat
+%%DATADIR%%/builder/amino/l-phe.zmat
 %%DATADIR%%/builder/amino/l-pro.zmat
-%%DATADIR%%/builder/amino/d-his.zmat
+%%DATADIR%%/builder/amino/l-pyl.zmat
+%%DATADIR%%/builder/amino/l-sec.zmat
+%%DATADIR%%/builder/amino/l-ser.zmat
+%%DATADIR%%/builder/amino/l-thr.zmat
+%%DATADIR%%/builder/amino/l-trp.zmat
+%%DATADIR%%/builder/amino/l-tyr.zmat
+%%DATADIR%%/builder/amino/l-val.zmat
 %%DATADIR%%/fragments/alcohols/ethanol.cml
 %%DATADIR%%/fragments/alcohols/methanol.cml
 %%DATADIR%%/fragments/alcohols/propan-1-ol.cml
@@ -369,6 +364,7 @@
 %%DATADIR%%/fragments/thiols/methanethiol.cml
 %%DATADIR%%/fragments/thiols/pentane-1-thiol.cml
 %%DATADIR%%/fragments/water.cml
+%%DATADIR%%/i18n/avogadro_af.qm
 %%DATADIR%%/i18n/avogadro_ar.qm
 %%DATADIR%%/i18n/avogadro_bg.qm
 %%DATADIR%%/i18n/avogadro_ca.qm
@@ -395,40 +391,37 @@
 %%DATADIR%%/i18n/avogadro_uk.qm
 %%DATADIR%%/i18n/avogadro_zh_CN.qm
 %%DATADIR%%/i18n/avogadro_zh_TW.qm
+%%DATADIR%%/i18n/libavogadro_ar.qm
+%%DATADIR%%/i18n/libavogadro_bg.qm
+%%DATADIR%%/i18n/libavogadro_ca.qm
 %%DATADIR%%/i18n/libavogadro_cs.qm
+%%DATADIR%%/i18n/libavogadro_de.qm
+%%DATADIR%%/i18n/libavogadro_en_CA.qm
+%%DATADIR%%/i18n/libavogadro_en_GB.qm
 %%DATADIR%%/i18n/libavogadro_es.qm
-%%DATADIR%%/i18n/libavogadro_zh_CN.qm
-%%DATADIR%%/i18n/libavogadro_tr.qm
-%%DATADIR%%/i18n/libavogadro_ko.qm
-%%DATADIR%%/i18n/libavogadro_ja.qm
+%%DATADIR%%/i18n/libavogadro_fi.qm
 %%DATADIR%%/i18n/libavogadro_fr.qm
-%%DATADIR%%/i18n/libavogadro_ca.qm
 %%DATADIR%%/i18n/libavogadro_id.qm
-%%DATADIR%%/i18n/libavogadro_sk.qm
-%%DATADIR%%/i18n/libavogadro_zh_TW.qm
-%%DATADIR%%/i18n/libavogadro_de.qm
 %%DATADIR%%/i18n/libavogadro_it.qm
-%%DATADIR%%/i18n/libavogadro_ar.qm
+%%DATADIR%%/i18n/libavogadro_ja.qm
+%%DATADIR%%/i18n/libavogadro_ko.qm
 %%DATADIR%%/i18n/libavogadro_nb.qm
-%%DATADIR%%/i18n/libavogadro_uk.qm
-%%DATADIR%%/i18n/libavogadro_pl.qm
-%%DATADIR%%/i18n/libavogadro_bg.qm
 %%DATADIR%%/i18n/libavogadro_nl.qm
-%%DATADIR%%/i18n/libavogadro_en_GB.qm
-%%DATADIR%%/i18n/libavogadro_ru.qm
+%%DATADIR%%/i18n/libavogadro_pl.qm
 %%DATADIR%%/i18n/libavogadro_pt.qm
-%%DATADIR%%/i18n/libavogadro_sv.qm
-%%DATADIR%%/i18n/libavogadro_fi.qm
-%%DATADIR%%/i18n/libavogadro_en_CA.qm
 %%DATADIR%%/i18n/libavogadro_pt_BR.qm
+%%DATADIR%%/i18n/libavogadro_ru.qm
+%%DATADIR%%/i18n/libavogadro_sk.qm
+%%DATADIR%%/i18n/libavogadro_sv.qm
+%%DATADIR%%/i18n/libavogadro_tr.qm
+%%DATADIR%%/i18n/libavogadro_uk.qm
+%%DATADIR%%/i18n/libavogadro_zh_CN.qm
+%%DATADIR%%/i18n/libavogadro_zh_TW.qm
 share/libavogadro/engineScripts/wireframe.py
 share/libavogadro/extensionScripts/example.py
- at dirrm share/libavogadro/toolScripts
 @dirrm share/libavogadro/extensionScripts
 @dirrm share/libavogadro/engineScripts
 @dirrm share/libavogadro
- at dirrm %%DATADIR%%/builder/amino
- at dirrm %%DATADIR%%/builder
 @dirrm %%DATADIR%%/i18n
 @dirrm %%DATADIR%%/fragments/thiols
 @dirrm %%DATADIR%%/fragments/sulfoxides
@@ -455,6 +448,8 @@
 @dirrm %%DATADIR%%/fragments/aldehydes
 @dirrm %%DATADIR%%/fragments/alcohols
 @dirrm %%DATADIR%%/fragments
+ at dirrm %%DATADIR%%/builder/amino
+ at dirrm %%DATADIR%%/builder
 @dirrm %%DATADIR%%
 @dirrm lib/avogadro/tools
 @dirrm lib/avogadro/extensions


>Release-Note:
>Audit-Trail:
>Unformatted:

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