ports/121690: [Update] ports: biology/fasta3 35.3.5

[Wen heping <Wen heping]

>Number:         121690
>Category:       ports
>Synopsis:       [Update] ports: biology/fasta3 35.3.5
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Fri Mar 14 06:20:01 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator:     Wen heping
>Release:        FreeBSD 7.0 release
>Organization:
ChangAn Middle Schoo
>Environment:
FreeBSD fb7.wenjing.com 7.0-RELEASE FreeBSD 7.0-RELEASE #0: Sun Feb 24 19:59:52 UTC 2008 root at logan.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386
>Description:
summary of changes:
1 update to 35.3.5 from 34.26.2
2 modify the Makefile to compile from .tar.gz file
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

--- Makefile.orig	2008-03-12 21:40:42.000000000 +0000
+++ Makefile	2008-03-12 21:51:57.000000000 +0000
@@ -7,17 +7,17 @@
 #
 
 PORTNAME=	fasta3
-PORTVERSION=	34.26.2
+PORTVERSION=	35.3.5
 CATEGORIES=	biology
-MASTER_SITES=	ftp://ftp.virginia.edu/pub/fasta/
+MASTER_SITES=	http://faculty.virginia.edu/wrpearson/fasta/
 DISTNAME=	fasta-${PORTVERSION}
-EXTRACT_SUFX=	.shar.Z
+#EXTRACT_SUFX=	.shar.Z
 
 MAINTAINER=	fernan at iib.unsam.edu.ar
 COMMENT=	A collection of programs for searching DNA and protein databases
 
 NO_CDROM=	May not be sold or incorporated into a commercial product
-WRKSRC=		${WRKDIR}/${PORTNAME}
+WRKSRC=		${WRKDIR}/${DISTNAME}
 SUB_FILES=	pkg-message
 MAKEFILE=	Makefile.freebsd
 
@@ -37,13 +37,6 @@
 		fasta3.1 fasty3.1  fasta3.1 tfasty3.1 fasta3.1 ssearch3.1 \
 		fastf3.1 tfastf3.1 fasts3.1 tfasts3.1
 
-do-extract:
-	@ ${RM} -rf ${WRKDIR}
-	@ ${MKDIR} ${WRKSRC}
-	@ for file in ${EXTRACT_ONLY}; do \
-	  cd ${WRKSRC} && (${GZCAT} ${DISTDIR}/$${file} | ${SH} >/dev/null); \
-	done
-
 post-install:
 	${INSTALL_DATA} ${WRKSRC}/fastlibs ${PREFIX}/etc/fastlibs.sample
 	@ ${MKDIR} ${DATADIR}
--- distinfo.orig	2007-03-09 11:26:13.000000000 +0000
+++ distinfo	2008-03-12 21:49:29.000000000 +0000
@@ -1,3 +1,3 @@
-MD5 (fasta-34.26.2.shar.Z) = 5fec360037baa1a0ab8cc4b11f3259a4
-SHA256 (fasta-34.26.2.shar.Z) = cd6494cb508892e9121b7a42d18d629b7cb3d431c04d47f6b31364f40f1094ae
-SIZE (fasta-34.26.2.shar.Z) = 853267
+MD5 (fasta-35.3.5.tar.gz) = d93ebf3fadf5225c10447fa428b92ff1
+SHA256 (fasta-35.3.5.tar.gz) = 02af2d016029a5c8d5aec32c498286643ef4bbfacb84b5ef22af77562f00589d
+SIZE (fasta-35.3.5.tar.gz) = 614736


>Release-Note:
>Audit-Trail:
>Unformatted: