ports/121690: [Update] ports: biology/fasta3 35.3.5
Wen heping <Wen heping
wenheping at gmail.com
Fri Mar 14 06:20:01 UTC 2008
>Number: 121690
>Category: ports
>Synopsis: [Update] ports: biology/fasta3 35.3.5
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: update
>Submitter-Id: current-users
>Arrival-Date: Fri Mar 14 06:20:01 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator: Wen heping
>Release: FreeBSD 7.0 release
>Organization:
ChangAn Middle Schoo
>Environment:
FreeBSD fb7.wenjing.com 7.0-RELEASE FreeBSD 7.0-RELEASE #0: Sun Feb 24 19:59:52 UTC 2008 root at logan.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386
>Description:
summary of changes:
1 update to 35.3.5 from 34.26.2
2 modify the Makefile to compile from .tar.gz file
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
--- Makefile.orig 2008-03-12 21:40:42.000000000 +0000
+++ Makefile 2008-03-12 21:51:57.000000000 +0000
@@ -7,17 +7,17 @@
#
PORTNAME= fasta3
-PORTVERSION= 34.26.2
+PORTVERSION= 35.3.5
CATEGORIES= biology
-MASTER_SITES= ftp://ftp.virginia.edu/pub/fasta/
+MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/
DISTNAME= fasta-${PORTVERSION}
-EXTRACT_SUFX= .shar.Z
+#EXTRACT_SUFX= .shar.Z
MAINTAINER= fernan at iib.unsam.edu.ar
COMMENT= A collection of programs for searching DNA and protein databases
NO_CDROM= May not be sold or incorporated into a commercial product
-WRKSRC= ${WRKDIR}/${PORTNAME}
+WRKSRC= ${WRKDIR}/${DISTNAME}
SUB_FILES= pkg-message
MAKEFILE= Makefile.freebsd
@@ -37,13 +37,6 @@
fasta3.1 fasty3.1 fasta3.1 tfasty3.1 fasta3.1 ssearch3.1 \
fastf3.1 tfastf3.1 fasts3.1 tfasts3.1
-do-extract:
- @ ${RM} -rf ${WRKDIR}
- @ ${MKDIR} ${WRKSRC}
- @ for file in ${EXTRACT_ONLY}; do \
- cd ${WRKSRC} && (${GZCAT} ${DISTDIR}/$${file} | ${SH} >/dev/null); \
- done
-
post-install:
${INSTALL_DATA} ${WRKSRC}/fastlibs ${PREFIX}/etc/fastlibs.sample
@ ${MKDIR} ${DATADIR}
--- distinfo.orig 2007-03-09 11:26:13.000000000 +0000
+++ distinfo 2008-03-12 21:49:29.000000000 +0000
@@ -1,3 +1,3 @@
-MD5 (fasta-34.26.2.shar.Z) = 5fec360037baa1a0ab8cc4b11f3259a4
-SHA256 (fasta-34.26.2.shar.Z) = cd6494cb508892e9121b7a42d18d629b7cb3d431c04d47f6b31364f40f1094ae
-SIZE (fasta-34.26.2.shar.Z) = 853267
+MD5 (fasta-35.3.5.tar.gz) = d93ebf3fadf5225c10447fa428b92ff1
+SHA256 (fasta-35.3.5.tar.gz) = 02af2d016029a5c8d5aec32c498286643ef4bbfacb84b5ef22af77562f00589d
+SIZE (fasta-35.3.5.tar.gz) = 614736
>Release-Note:
>Audit-Trail:
>Unformatted:
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