ports/111821: [PATCH] biology/py-biopython: update to 1.43
P.BandieraPaiva
paiva at unifesp.br
Wed Apr 18 17:20:33 UTC 2007
>Number: 111821
>Category: ports
>Synopsis: [PATCH] biology/py-biopython: update to 1.43
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: update
>Submitter-Id: current-users
>Arrival-Date: Wed Apr 18 17:20:28 GMT 2007
>Closed-Date:
>Last-Modified:
>Originator: P.BandieraPaiva
>Release: FreeBSD 6.2-RELEASE-p2 i386
>Organization:
>Environment:
System: FreeBSD kaya.epm.br 6.2-RELEASE-p2 FreeBSD 6.2-RELEASE-p2 #2: Fri Mar 9 08:45:53 BRT
>Description:
- Update to 1.43
Added file(s):
- OLD-DIRS
Port maintainer (mauricio at arareko.net) is cc'd.
Generated with FreeBSD Port Tools 0.77
>How-To-Repeat:
>Fix:
--- py24-biopython-1.43.patch begins here ---
diff -ruN --exclude=CVS /usr/ports/biology/py-biopython/Makefile /home/paiva/src/py-biopython/Makefile
--- /usr/ports/biology/py-biopython/Makefile Tue Oct 31 11:25:21 2006
+++ /home/paiva/src/py-biopython/Makefile Wed Apr 18 09:24:44 2007
@@ -1,12 +1,12 @@
-# New ports collection makefile for: py-biopython
-# Date created: 28 July 2000
-# Whom: Johann Visagie <johann at egenetics.com>
+# New ports collection makefile for: py-biopython
+# Date created: 28 July 2000
+# Whom: Johann Visagie <johann at egenetics.com>
#
# $FreeBSD: ports/biology/py-biopython/Makefile,v 1.22 2006/10/31 13:25:21 miwi Exp $
#
PORTNAME= biopython
-PORTVERSION= 1.42
+PORTVERSION= 1.43
CATEGORIES= biology python
MASTER_SITES= http://www.biopython.org/DIST/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -14,8 +14,7 @@
MAINTAINER= mauricio at arareko.net
COMMENT= A collection of Python modules for bioinformatics
-BUILD_DEPENDS= ${PYNUMERIC} \
- ${PYTHON_SITELIBDIR}/mx/TextTools/__init__.py:${PORTSDIR}/lang/py-mx-base
+BUILD_DEPENDS= ${PYNUMERIC}:${PORTSDIR}/lang/py-mx-base
RUN_DEPENDS= ${BUILD_DEPENDS}
CONFLICTS= py*-martel-[0-9]*
diff -ruN --exclude=CVS /usr/ports/biology/py-biopython/OLD-DIRS /home/paiva/src/py-biopython/OLD-DIRS
--- /usr/ports/biology/py-biopython/OLD-DIRS Wed Dec 31 21:00:00 1969
+++ /home/paiva/src/py-biopython/OLD-DIRS Wed Apr 18 14:09:59 2007
@@ -0,0 +1,411 @@
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diff -ruN --exclude=CVS /usr/ports/biology/py-biopython/distinfo /home/paiva/src/py-biopython/distinfo
--- /usr/ports/biology/py-biopython/distinfo Tue Oct 31 11:25:21 2006
+++ /home/paiva/src/py-biopython/distinfo Tue Apr 17 21:33:14 2007
@@ -1,3 +1,3 @@
-MD5 (biopython-1.42.tar.gz) = 6d9bf58d0fcfa5a3b2053ad419069ff3
-SHA256 (biopython-1.42.tar.gz) = ba4d00fdf7de67196ecba317dee09a14850b40596bd83d73e458c5f19fc9fc58
-SIZE (biopython-1.42.tar.gz) = 3933507
+MD5 (biopython-1.43.tar.gz) = 3c275b321bb1db7d8bda764913aaedcd
+SHA256 (biopython-1.43.tar.gz) = eb424da9efddbf376c31660786ecb34ff893ea752bf7300f4a06d1b8c6ba175b
+SIZE (biopython-1.43.tar.gz) = 3867907
diff -ruN --exclude=CVS /usr/ports/biology/py-biopython/pkg-plist /home/paiva/src/py-biopython/pkg-plist
--- /usr/ports/biology/py-biopython/pkg-plist Tue Oct 31 11:25:21 2006
+++ /home/paiva/src/py-biopython/pkg-plist Wed Apr 18 14:15:10 2007
@@ -1,1244 +1,1198 @@
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+lib/python2.4/site-packages/Bio/writers/SeqRecord/fasta.py
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+lib/python2.4/site-packages/Bio/writers/__init__.pyo
+lib/python2.4/site-packages/BioSQL/BioSeq.py
+lib/python2.4/site-packages/BioSQL/BioSeq.pyc
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+lib/python2.4/site-packages/BioSQL/BioSeqDatabase.py
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+lib/python2.4/site-packages/BioSQL/BioSeqDatabase.pyo
+lib/python2.4/site-packages/BioSQL/DBUtils.py
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+lib/python2.4/site-packages/BioSQL/__init__.pyo
+lib/python2.4/site-packages/Martel/Dispatch.py
+lib/python2.4/site-packages/Martel/Dispatch.pyc
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+lib/python2.4/site-packages/Martel/Expression.py
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+lib/python2.4/site-packages/Martel/msre_constants.pyo
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+lib/python2.4/site-packages/Martel/setup.py
+lib/python2.4/site-packages/Martel/setup.pyc
+lib/python2.4/site-packages/Martel/setup.pyo
+share/nls/POSIX
+share/nls/en_US.US-ASCII
--- py24-biopython-1.43.patch ends here ---
>Release-Note:
>Audit-Trail:
>Unformatted:
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