ports/91918: New port for MINC (Medical Imaging NetCDF)

Jason Bacon bacon at smithers.neuro.mcw.edu
Tue Jan 17 20:10:21 UTC 2006 

>Number:         91918
>Category:       ports
>Synopsis:       New port for MINC (Medical Imaging NetCDF)
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Tue Jan 17 20:10:04 GMT 2006
>Closed-Date:
>Last-Modified:
>Originator:     Jason Bacon
>Release:        FreeBSD 5.4-RELEASE i386
>Organization:
Medical College of Wisconsin
>Environment:
System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 bacon at clone.neuro.mcw.edu:/usr/obj/usr/src/sys/clone i386


>Description:
New port for MINC 1.4 (Medical Imaging NetCDF) library and tools.

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	minc
#	minc/Makefile
#	minc/pkg-descr
#	minc/distinfo
#	minc/pkg-message
#	minc/pkg-plist
#
echo c - minc
mkdir -p minc > /dev/null 2>&1
echo x - minc/Makefile
sed 's/^X//' >minc/Makefile << 'END-of-minc/Makefile'
X############################################################################
X# New ports collection Makefile for:   minc 1.x (Medical Imaging NetCDF)
X# Date created:        21 Dec 2005
X# Whom:                jbacon
X#
X# $FreeBSD$
X#
X
X############################################################################
X# http://www.bic.mni.mcgill.ca/software/minc/
X# is the ultimate source for MINC, and will always contain the latest
X# source release.  If this port is not up to date enough for you,
X# you can download the latest sources and build manually.  On FreeBSD,
X# you must configure with the environment variable LDFLAGS set to
X# ${LOCALBASE}/lib so that the configure script will find libnetcdf.
X# Of course, the netcdf port must be installed first.
X
XPORTNAME=	minc
XPORTVERSION=	1.4
XCATEGORIES=	science biology
XMASTER_SITES=	http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
X		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
X
XMAINTAINER=	bacon at smithers.neuro.mcw.edu
XCOMMENT=	Medical Imaging NetCDF
X
XLIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
X
XUSE_LIBTOOL_VER=	13
X
XCONFLICTS=	minc-[2-9]*
X
X# Build parameters
XWRKSRC=		${WRKDIR}/minc-${PORTVERSION}
X
X# Install in the same location as the netcdf port to make life simple.
X# Programs that link with MINC will need netcdf as well.
XPREFIX=		${LOCALBASE}
X
X# Install parameters
XMAN1=	voxeltoworld.1 \
X	minc_modify_header.1 \
X	mincaverage.1 \
X	minccalc.1 \
X	mincconcat.1 \
X	minccopy.1 \
X	mincdiff.1 \
X	mincedit.1 \
X	mincexpand.1 \
X	mincextract.1 \
X	mincheader.1 \
X	mincinfo.1 \
X	minclookup.1 \
X	mincmakescalar.1 \
X	mincmakevector.1 \
X	mincmath.1 \
X	mincpik.1 \
X	mincresample.1 \
X	mincreshape.1 \
X	mincstats.1 \
X	minctoraw.1 \
X	invert_raw_image.1 \
X	mincview.1 \
X	mincwindow.1 \
X	rawtominc.1 \
X	transformtags.1 \
X	xfmconcat.1 \
X	xfminvert.1 \
X	ecattominc.1 \
X	minctoecat.1 \
X	nii2mnc.1 \
X	mnc2nii.1 \
X	upet2mnc.1 \
X	dcm2mnc.1
XMAN3=	ParseArgv.3
XMANCOMPRESSED=	no
X
XHAS_CONFIGURE=	yes
XCONFIGURE_ENV=	CFLAGS="-I${LOCALBASE}/include" LDFLAGS="-L${LOCALBASE}/lib"
X
Xpost-install:
X	${CAT} pkg-message
X
X.include <bsd.port.mk>
END-of-minc/Makefile
echo x - minc/pkg-descr
sed 's/^X//' >minc/pkg-descr << 'END-of-minc/pkg-descr'
XMINC (Medical Imaging NetCDF) is a medical imaging data format and an 
Xassociated set of tools and libraries. MINC was created in 1993 by Peter 
XNeelin at the McConnell Brain Imaging Centre of the Montreal Neurological 
XInstitute. Many others have contributed to the design and implementation 
XMINC over the years.
X
XWWW: http://www.bic.mni.mcgill.ca/software/minc/
X
XPort maintainer: Jason W. Bacon
X		 bacon at smithers.neuro.mcw.edu
END-of-minc/pkg-descr
echo x - minc/distinfo
sed 's/^X//' >minc/distinfo << 'END-of-minc/distinfo'
XMD5 (minc-1.4.tar.gz) = 873a6deed8109f95d29a197bad9f6070
XSHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
XSIZE (minc-1.4.tar.gz) = 1213768
END-of-minc/distinfo
echo x - minc/pkg-message
sed 's/^X//' >minc/pkg-message << 'END-of-minc/pkg-message'
X=============================================================================
XFor questions or comments regarding this port, please contact the
Xport maintainer: bacon at smithers.neuro.mcw.edu
X
XFor MINC usage, please visit the MINC WEB site at
X
Xhttp://www.bic.mni.mcgill.ca/software/minc/
X=============================================================================
END-of-minc/pkg-message
echo x - minc/pkg-plist
sed 's/^X//' >minc/pkg-plist << 'END-of-minc/pkg-plist'
X./lib/libminc.so.1
X./lib/libminc.la
X./lib/libminc.a
X./lib/libvolume_io.so.0
X./lib/libvolume_io.la
X./lib/libvolume_io.a
X./bin/voxeltoworld
X./bin/worldtovoxel
X./bin/minc_modify_header
X./bin/mincaverage
X./bin/minccalc
X./bin/mincconcat
X./bin/minccopy
X./bin/mincexpand
X./bin/mincextract
X./bin/mincinfo
X./bin/minclookup
X./bin/mincmakescalar
X./bin/mincmakevector
X./bin/mincmath
X./bin/mincresample
X./bin/mincreshape
X./bin/mincstats
X./bin/minctoraw
X./bin/invert_raw_image
X./bin/mincwindow
X./bin/rawtominc
X./bin/transformtags
X./bin/xfmconcat
X./bin/xfminvert
X./bin/ecattominc
X./bin/minctoecat
X./bin/mnc2nii
X./bin/nii2mnc
X./bin/upet2mnc
X./bin/dcm2mnc
X./bin/mincdiff
X./bin/mincedit
X./bin/mincheader
X./bin/minchistory
X./bin/mincpik
X./bin/mincview
X./include/minc.h
X./include/ParseArgv.h
X./include/voxel_loop.h
X./include/nd_loop.h
X./include/time_stamp.h
X./include/volume_io.h
X./include/minc_simple.h
X./include/volume_io/alloc.h
X./include/volume_io/arrays.h
X./include/volume_io/basic.h
X./include/volume_io/def_math.h
X./include/volume_io/files.h
X./include/volume_io/geom_structs.h
X./include/volume_io/geometry.h
X./include/volume_io/internal_volume_io.h
X./include/volume_io/multidim.h
X./include/volume_io/progress.h
X./include/volume_io/string_funcs.h
X./include/volume_io/system_dependent.h
X./include/volume_io/transforms.h
X./include/volume_io/vol_io_prototypes.h
X./include/volume_io/volume.h
X./include/volume_io/volume_cache.h
END-of-minc/pkg-plist
exit

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