ports/73149: [New ports]: biology/mpiblast

[Choe, Cheng-Dae]

The following reply was made to PR ports/73149; it has been noted by GNATS.

From: "Choe, Cheng-Dae" <whitekid at gmail.com>
To: freebsd-gnats-submit at freebsd.org, freebsd-ports-bugs at freebsd.org
Cc:  
Subject: Re: ports/73149: [New ports]: biology/mpiblast
Date: Tue, 26 Oct 2004 15:52:45 +0900

 sorry, previous send-pr don't contains files directory. :) my mistake ^^
 
 here is the right versioin of shar `find mpiblast`
 ------------
 # This is a shell archive.  Save it in a file, remove anything before
 # this line, and then unpack it by entering "sh file".  Note, it may
 # create directories; files and directories will be owned by you and
 # have default permissions.
 #
 # This archive contains:
 #
 #       mpiblast/Makefile
 #       mpiblast/distinfo
 #       mpiblast/files
 #       mpiblast/pkg-descr
 #       mpiblast/pkg-message
 #       mpiblast/pkg-plist
 #
 echo x - mpiblast/Makefile
 sed 's/^X//' >mpiblast/Makefile << 'END-of-mpiblast/Makefile'
 X# New ports collection makefile for:    mpiblast
 X# Date created:         23 October 2004
 X# Whom:                 whitekid
 X#
 X# $FreeBSD$
 X#
 X
 XPORTNAME=3D      mpiblast
 XPORTVERSION=3D   1.2.1
 XPORTREVISION=3D  0
 XCATEGORIES=3D    biology parallel
 XMASTER_SITES=3D  http://mpiblast.lanl.gov/releases/
 XDISTNAME=3D      mpiBLAST-${PORTVERSION}
 X
 XMAINTAINER=3D    whitekid at gmail.com
 XCOMMENT=3D       A parallelization for NCBI BLAST
 X
 XBUILD_DEPENDS=3D ${NONEXISTENT}:${PORTSDIR}/biology/ncbi-toolkit:build \
 X       ${LOCALBASE}/include/mpi.h:${PORTSDIR}/net/lam
 X
 XGNU_CONFIGURE=3D yes
 X
 XCONFIGURE_ARGS=3D        --with-ncbi=3D${PORTSDIR}/biology/ncbi-toolkit/wo=
 rk/ncbi
 X
 XDOCS=3D  AUTHORS COPYING ChangeLog INSTALL LICENSE NEWS README TODO
 XDATAS=3D WWWBlastWrap.pl
 X
 Xpost-install:
 X       @${INSTALL_DATA} ${WRKSRC}/mpiblast.conf
 ${PREFIX}/etc/mpiblast.conf.sample
 X
 X.if !defined(NOPORTDOCS)
 X       @${MKDIR} ${DOCSDIR}
 X.for file in ${DOCS}
 X       @${INSTALL_DATA} ${WRKSRC}/${file} ${DOCSDIR}
 X.endfor
 X
 X       @${MKDIR} ${DATADIR}
 X.for file in ${DATAS}
 X       @${INSTALL_DATA} ${WRKSRC}/${file} ${DATADIR}
 X.endfor
 X.endif
 X
 X.include <bsd.port.mk>
 END-of-mpiblast/Makefile
 echo x - mpiblast/distinfo
 sed 's/^X//' >mpiblast/distinfo << 'END-of-mpiblast/distinfo'
 XMD5 (mpiBLAST-1.2.1.tar.gz) =3D 7724f4fbdcecd00d0cc597214efd54e1
 XSIZE (mpiBLAST-1.2.1.tar.gz) =3D 170513
 END-of-mpiblast/distinfo
 echo c - mpiblast/files
 mkdir -p mpiblast/files > /dev/null 2>&1
 echo x - mpiblast/pkg-descr
 sed 's/^X//' >mpiblast/pkg-descr << 'END-of-mpiblast/pkg-descr'
 XmpiBLAST is a freely available open source parallelization of NCBI BLAST.
 XmpiBLAST segments the BLAST database and distributes it across cluster nod=
 es,
 Xpermitting BLAST queries to be processed on many nodes simultaneously. mpi=
 BLAST
 Xis based on MPI. The current release runs under Linux and Windows, and wil=
 l
 Xprobably work on other varieties of Unix as well.
 X
 XWWW: http://mpiblast.lanl.gov/
 END-of-mpiblast/pkg-descr
 echo x - mpiblast/pkg-message
 sed 's/^X//' >mpiblast/pkg-message << 'END-of-mpiblast/pkg-message'
 X--------------------------------------------------------------------------
 X
 XThe mpiBLAST package has been successfully installed.
 X
 XNB:  A sample configuration file has been installed to %%PREFIX%%/etc as
 X"mpiblast.conf.sample".  This may be renamed to "mpiblast.conf" and edited
 Xto suit the requirements of a particular site.
 X
 XPlease read %%DOCSDIR%%/README file for detail.
 X
 X--------------------------------------------------------------------------
 END-of-mpiblast/pkg-message
 echo x - mpiblast/pkg-plist
 sed 's/^X//' >mpiblast/pkg-plist << 'END-of-mpiblast/pkg-plist'
 Xbin/mpiblast
 Xbin/mpiformatdb
 Xetc/mpiblast.conf
 Xetc/mpiblast.conf.sample
 X%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
 X%%PORTDOCS%%%%DOCSDIR%%/COPYING
 X%%PORTDOCS%%%%DOCSDIR%%/ChangeLog
 X%%PORTDOCS%%%%DOCSDIR%%/INSTALL
 X%%PORTDOCS%%%%DOCSDIR%%/LICENSE
 X%%PORTDOCS%%%%DOCSDIR%%/NEWS
 X%%PORTDOCS%%%%DOCSDIR%%/README
 X%%PORTDOCS%%%%DOCSDIR%%/TODO
 X%%DATADIR%%/WWWBlastWrap.pl
 X at dirrm %%DATADIR%%
 X at dirrm %%DOCSDIR%%
 END-of-mpiblast/pkg-plist
 exit
 ---------------------
 
 sorry again.
 
 On Tue, 26 Oct 2004 06:50:25 GMT, freebsd-gnats-submit at freebsd.org
 <freebsd-gnats-submit at freebsd.org> wrote:
 > Thank you very much for your problem report.
 > It has the internal identification `ports/73149'.
 > The individual assigned to look at your
 > report is: freebsd-ports-bugs.
 >=20
 > You can access the state of your problem report at any time
 > via this link:
 >=20
 > http://www.freebsd.org/cgi/query-pr.cgi?pr=3D73149
 >=20
 > >Category:       ports
 > >Responsible:    freebsd-ports-bugs
 > >Synopsis:       [New ports]: biology/mpiblast
 > >Arrival-Date:   Tue Oct 26 06:50:24 GMT 2004
 >=20
 
 
 --=20
 Choe, Cheng-Dae(=EC=B5=9C=EC=A0=95=EB=8C=80)
 Blog: http://www.comdongin.com/