[package - 120armv7-quarterly][science/afni] Failed for afni-19.1.20 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sat Aug 17 13:47:49 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb at FreeBSD.org
Last committer: jwb at FreeBSD.org
Ident: $FreeBSD: branches/2019Q3/science/afni/Makefile 504496 2019-06-18 19:00:55Z jwb $
Log URL: http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/509118/logs/afni-19.1.20.log
Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=509118
Log:
=>> Building science/afni
build started at Sat Aug 17 13:10:33 UTC 2019
port directory: /usr/ports/science/afni
package name: afni-19.1.20
building for: FreeBSD 120armv7-quarterly-job-18 12.0-RELEASE-p9 FreeBSD 12.0-RELEASE-p9 1200086 arm
maintained by: jwb at FreeBSD.org
Makefile ident: $FreeBSD: branches/2019Q3/science/afni/Makefile 504496 2019-06-18 19:00:55Z jwb $
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> afni-19.1.20 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.11.1.txz
[120armv7-quarterly-job-18] Installing pkg-1.11.1...
[120armv7-quarterly-job-18] Extracting pkg-1.11.1: .......... done
===> afni-19.1.20 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of afni-19.1.20
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-19.1.20 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-19.1.20 for building
=> SHA256 Checksum OK for afni-afni-AFNI_19.1.20_GH0.tar.gz.
===========================================================================
<snip>
configure: warning: The C++ interface will not be built
checking how to run the C preprocessor... cpp8
configure: warning: Fortran-77 compiler is explicitly null
configure: warning: The Fortran-77 interface will not be built
checking for Fortran .F compiler...
checking for Fortran preprocessor... cpp8
checking user-defined Fortran-90 compiler ""... failed to compile test program
configure: warning: The Fortran-90 interface will not be built
checking for nm utility
checking for /usr/local/bin/nm... /usr/local/bin/nm
checking nm flags...
checking for math library
checking for tanh in -lc... no
checking for tanh in -lm... yes
checking for ar utility
checking for /usr/bin/ar... /usr/bin/ar
checking ar flags... cru
checking for nm utility
checking for /usr/local/bin/nm... (cached) /usr/local/bin/nm
checking nm flags...
checking for ranlib... /usr/bin/ranlib
checking for stdlib.h... yes
checking for sys/types.h... yes
checking for strerror... yes
checking for working ftruncate()... yes
checking for working alloca.h... no
checking for alloca... yes
checking for st_blksize in struct stat... yes
checking for IEEE floating point format... yes
checking for ANSI C header files... yes
checking for size_t... yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... no
checking whether char is unsigned... yes
checking whether byte ordering is bigendian... no
checking size of short... 2
checking size of int... 4
checking size of long... 4
checking size of float... 4
checking size of double... 8
checking size of off_t... 8
checking size of size_t... 4
checking for manual-page index command...
checking binary distribution directory... /home/ftp/pub/binary/dummy_system
updating cache ./config.cache
creating ./config.status
creating macros.make
udcreating fortran/nfconfig.inc
fortran/nfconfig.inc is unchanged
creating libsrc/ncconfig.h
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `all' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/libsrc
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/libsrc'
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG attr.c
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG dim.c
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gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG -DVERSION=`cat ../VERSION` libvers.c
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gm4 -B10000 putget.m4 >putget.c
gm4: warning: `m4 -B' may be removed in a future release
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gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG string.c
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG v1hpg.c
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG v2i.c
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG var.c
/usr/bin/ar cru libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o putget.o string.o v1hpg.o v2i.o var.o
/usr/bin/ranlib libnetcdf.a
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/libsrc'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/libsrc
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/libsrc'
rm -f *.o *.a *.so *.sl *.i *.Z core t_ncio.o t_ncio t_ncx.o t_ncx t_ncxx.o t_ncxx t_nc.o t_nc test.nc *.so
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/libsrc'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nctest
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nctest'
rm -f *.o *.a *.so *.sl *.i *.Z core nctest lint.out test.nc test2.nc times
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nctest'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nc_test
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nc_test'
rm -f *.o *.a *.so *.sl *.i *.Z core nc_test test.nc scratch.nc lint.out times
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nc_test'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/fortran
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/fortran'
rm -f *.o *.a *.so *.sl *.i *.Z core copy.nc ftest ftest.f77 test.nc
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/fortran'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/f90
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/f90'
rm -f *.o *.a *.so *.sl *.i *.Z core netcdf_test *.mod example.nc example.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/f90'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nf_test
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nf_test'
rm -f *.o *.a *.so *.sl *.i *.Z core times lint.out nf_test scratch.nc *.f77
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/nf_test'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/ncdump
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/ncdump'
rm -f *.o *.a *.so *.sl *.i *.Z core ncdump test0.nc test1.nc test1.cdl test2.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/ncdump'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/ncgen
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/ncgen'
rm -f *.o *.a *.so *.sl *.i *.Z core ncgen netcdf.inc c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/ncgen'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/cxx
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/cxx'
rm -f *.o *.a *.so *.sl *.i *.Z core nctst test.out example.nc *.cps *.dvi *.fns *.log *~ *.gs *.aux *.cp *.fn *.ky *.pg *.toc *.tp *.vr
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src/cxx'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
rm -f *.o *.a *.so *.sl *.i *.Z core
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src/netcdf-3.5.0/src'
/bin/rm -f thd_mincread.o
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c thd_mincread.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
/bin/rm -f suma_afni_surface.o
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_afni_surface.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
/bin/rm -f suma_datasets.o
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_datasets.c -o suma_datasets.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
/bin/rm -f suma_utils.o
gcc8 -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_utils.c -o suma_utils.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
suma_utils.c: In function 'SUMA_StringAppend_va':
suma_utils.c:3048:14: error: used struct type value where scalar is required
if (vararg_ptr) {
^~~~~~~~~~
gmake[1]: *** [Makefile.INCLUDE:2001: suma_utils.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_19.1.20/src'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/afni
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