[package - head-powerpc64-default][biology/star] Failed for rna-STAR-2.7.0.f in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri May 3 14:08:07 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb at FreeBSD.org
Last committer: jwb at FreeBSD.org
Ident: $FreeBSD: head/biology/star/Makefile 499763 2019-04-23 15:03:29Z jwb $
Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p500451_s346935/logs/rna-STAR-2.7.0.f.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p500451_s346935
Log:
=>> Building biology/star
build started at Fri May 3 14:06:37 UTC 2019
port directory: /usr/ports/biology/star
package name: rna-STAR-2.7.0.f
building for: FreeBSD head-powerpc64-default-job-11 13.0-CURRENT FreeBSD 13.0-CURRENT 1300021 powerpc
maintained by: jwb at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/star/Makefile 499763 2019-04-23 15:03:29Z jwb $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300012
Jail OSVERSION: 1300021
Job Id: 11
!!! Jail is newer than host. (Jail: 1300021, Host: 1300012) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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jwb at FreeBSD.org
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CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> rna-STAR-2.7.0.f depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-powerpc64-default-job-11] Installing pkg-1.10.5_5...
[head-powerpc64-default-job-11] Extracting pkg-1.10.5_5: .......... done
===> rna-STAR-2.7.0.f depends on file: /usr/local/sbin/pkg - found
===> Returning to build of rna-STAR-2.7.0.f
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by rna-STAR-2.7.0.f for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by rna-STAR-2.7.0.f for building
=> SHA256 Checksum OK for alexdobin-STAR-2.7.0f_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by rna-STAR-2.7.0.f for building
===> Extracting for rna-STAR-2.7.0.f
=> SHA256 Checksum OK for alexdobin-STAR-2.7.0f_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for rna-STAR-2.7.0.f
===> Applying FreeBSD patches for rna-STAR-2.7.0.f
===========================================================================
=======================<phase: build-depends >============================
===> rna-STAR-2.7.0.f depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-powerpc64-default-job-11] Installing gmake-4.2.1_3...
[head-powerpc64-default-job-11] `-- Installing gettext-runtime-0.19.8.1_2...
<snip>
cram/cram_decode.c:1490: warning: comparison between signed and unsigned
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/cram_encode.o cram/cram_encode.c
cram/cram_encode.c: In function 'cram_add_base':
cram/cram_encode.c:1584: warning: unused parameter 'fd'
cram/cram_encode.c: In function 'cram_add_quality':
cram/cram_encode.c:1602: warning: unused parameter 'fd'
cram/cram_encode.c: In function 'cram_add_deletion':
cram/cram_encode.c:1615: warning: unused parameter 'base'
cram/cram_encode.c: In function 'cram_add_hardclip':
cram/cram_encode.c:1649: warning: unused parameter 'base'
cram/cram_encode.c: In function 'cram_add_skip':
cram/cram_encode.c:1659: warning: unused parameter 'base'
cram/cram_encode.c: In function 'cram_add_pad':
cram/cram_encode.c:1669: warning: unused parameter 'base'
cram/cram_encode.c: In function 'cram_encode_aux_1_0':
cram/cram_encode.c:1712: warning: unused parameter 'fd'
cram/cram_encode.c: In function 'cram_encode_aux':
cram/cram_encode.c:1868: warning: unused parameter 'fd'
cram/cram_encode.c: In function 'process_one_read':
cram/cram_encode.c:2240: warning: comparison between signed and unsigned
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/cram_index.o cram/cram_index.c
cram/cram_index.c: In function 'cram_index_load':
cram/cram_index.c:99: warning: missing initializer
cram/cram_index.c:99: warning: (near initialization for 'kstr.m')
cram/cram_index.c: In function 'cram_index_build':
cram/cram_index.c:468: warning: comparison between signed and unsigned
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/cram_io.o cram/cram_io.c
cram/cram_io.c: In function 'paranoid_fclose':
cram/cram_io.c:1006: warning: implicit declaration of function 'fsync'
cram/cram_io.c: In function 'refs_from_header':
cram/cram_io.c:1279: warning: unused parameter 'fd'
cram/cram_io.c: In function 'expand_cache_path':
cram/cram_io.c:1368: warning: comparison between signed and unsigned
cram/cram_io.c:1368: warning: signed and unsigned type in conditional expression
cram/cram_io.c: In function 'cram_populate_ref':
cram/cram_io.c:1540: warning: comparison between signed and unsigned
cram/cram_io.c:1544: warning: implicit declaration of function 'unlink'
cram/cram_io.c: In function 'load_ref_portion':
cram/cram_io.c:1645: warning: comparison between signed and unsigned
cram/cram_io.c: In function 'full_path':
cram/cram_io.c:2915: warning: implicit declaration of function 'getcwd'
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/cram_samtools.o cram/cram_samtools.c
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/cram_stats.o cram/cram_stats.c
cram/cram_stats.c: In function 'cram_stats_add':
cram/cram_stats.c:74: warning: empty body in an else-statement
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/files.o cram/files.c
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/mFILE.o cram/mFILE.c
cram/mFILE.c: In function 'mfload':
cram/mFILE.c:102: warning: comparison between signed and unsigned
cram/mFILE.c:73: warning: unused parameter 'binary'
cram/mFILE.c: In function 'mftruncate':
cram/mFILE.c:416: warning: signed and unsigned type in conditional expression
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/md5.o cram/md5.c
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/open_trace_file.o cram/open_trace_file.c
cram/open_trace_file.c: In function 'find_file_dir':
cram/open_trace_file.c:271: warning: comparison between signed and unsigned
cram/open_trace_file.c:271: warning: signed and unsigned type in conditional expression
cram/open_trace_file.c:272: warning: comparison between signed and unsigned
cram/open_trace_file.c:272: warning: signed and unsigned type in conditional expression
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/pooled_alloc.o cram/pooled_alloc.c
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/sam_header.o cram/sam_header.c
cram/sam_header.c: In function 'sam_hdr_add_lines':
cram/sam_header.c:320: warning: comparison between signed and unsigned
cram/sam_header.c: In function 'sam_hdr_vadd':
cram/sam_header.c:440: warning: comparison between signed and unsigned
cram/sam_header.c: In function 'sam_hdr_find_key':
cram/sam_header.c:672: warning: unused parameter 'sh'
cram/sam_header.c: In function 'sam_hdr_rebuild':
cram/sam_header.c:781: warning: comparison between signed and unsigned
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/string_alloc.o cram/string_alloc.c
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/thread_pool.o cram/thread_pool.c
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/vlen.o cram/vlen.c
cc -g -Wall -O2 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -I. -DSAMTOOLS=1 -c -o cram/zfio.o cram/zfio.c
ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/md5.o cram/open_trace_file.o cram/pooled_alloc.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o
ranlib libhts.a
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/star/work/STAR-2.7.0f/source/htslib'
echo ChimericDetection.cpp stringSubstituteAll.cpp InOutStreams.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_assignAlignToWindow.cpp loadGTF.cpp mapThreadsSpawn.cpp ReadAlign.cpp SequenceFuns.cpp funCompareUintAndSuffixesMemcmp.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ParametersSolo.cpp ReadAlign_CIGAR.cpp SoloReadBarcode.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_multMapSelect.cpp genomeParametersWrite.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlignChunk_processChunks.cpp streamFuns.cpp insertSeqSA.cpp BAMbinSortUnmapped.cpp Genome.cpp sjdbInsertJunctions.cpp Genome_insertSequences.cpp binarySearch2.cpp serviceFuns.cpp ReadAlignChunk_mapChunk.cpp ReadAlign_maxMappableLength2strands.cpp outputSJ.cpp SoloRead_record.cpp ReadAlign_chimericDetection.cpp Transcriptome.cpp Parameters.cpp GlobalVariables.cpp stitchWindowAligns.cpp SoloFeature_collapseUMI.cpp ReadAlign_chimericDetectionOld.cpp Parameters_closeReadsFiles.cpp sjAlignSpli
t.cpp Genome_genomeGenerate.cpp signalFromBAM.cpp genomeSAindex.cpp stitchGapIndel.cpp TimeFunctions.cpp stitchAlignToTranscript.cpp Transcript_generateCigarP.cpp sjdbLoadFromStream.cpp Quantifications.cpp Parameters_openReadsFiles.cpp ChimericAlign.cpp SoloReadFeature_record.cpp blocksOverlap.cpp ErrorWarning.cpp ReadAlign_outputTranscriptCIGARp.cpp PackedArray.cpp ReadAlignChunk.cpp SoloFeature_processRecords.cpp SoloRead.cpp SoloFeature_outputResults.cpp ReadAlign_alignBAM.cpp ReadAlign_outputAlignments.cpp ReadAlign_calcCIGAR.cpp Transcriptome_quantAlign.cpp SoloReadFeature_getFeature.cpp Solo.cpp BAMbinSortByCoordinate.cpp Parameters_readSAMheader.cpp ReadAlign_waspMap.cpp STAR.cpp SoloFeature.cpp funCompareUintAndSuffixes.cpp ReadAlign_stitchPieces.cpp ChimericSegment.cpp SoloReadFeature_inputRecords.cpp Transcriptome_geneCountsAddAlign.cpp ChimericDetection_chimericDetectionMult.cpp Stats.cpp SoloReadFeature.cpp Variation.cpp readLoad.cpp ChimericAlign_chimericJunctionOutput.
cpp ReadAlign_mapOneRead.cpp ReadAlign_outpu!
tTranscriptSAM.cpp bamRemoveDuplicates.cpp sjdbBuildIndex.cpp Chain.cpp genomeScanFastaFiles.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_peOverlapMergeMap.cpp sjdbLoadFromFiles.cpp OutSJ.cpp ChimericAlign_chimericStitching.cpp BAMfunctions.cpp Transcript_alignScore.cpp extendAlign.cpp alignSmithWaterman.cpp SuffixArrayFuns.cpp Transcript_variationOutput.cpp SoloReadBarcode_getCBandUMI.cpp ReadAlign_mappedFilter.cpp ReadAlign_oneRead.cpp sjdbPrepare.cpp SharedMemory.cpp ReadAlign_stitchWindowSeeds.cpp BAMoutput.cpp ReadAlign_storeAligns.cpp Transcript_variationAdjust.cpp sysRemoveDir.cpp ThreadControl.cpp Transcript.cpp bam_cat.c
ChimericDetection.cpp stringSubstituteAll.cpp InOutStreams.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_assignAlignToWindow.cpp loadGTF.cpp mapThreadsSpawn.cpp ReadAlign.cpp SequenceFuns.cpp funCompareUintAndSuffixesMemcmp.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ParametersSolo.cpp ReadAlign_CIGAR.cpp SoloReadBarcode.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_multMapSelect.cpp genomeParametersWrite.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlignChunk_processChunks.cpp streamFuns.cpp insertSeqSA.cpp BAMbinSortUnmapped.cpp Genome.cpp sjdbInsertJunctions.cpp Genome_insertSequences.cpp binarySearch2.cpp serviceFuns.cpp ReadAlignChunk_mapChunk.cpp ReadAlign_maxMappableLength2strands.cpp outputSJ.cpp SoloRead_record.cpp ReadAlign_chimericDetection.cpp Transcriptome.cpp Parameters.cpp GlobalVariables.cpp stitchWindowAligns.cpp SoloFeature_collapseUMI.cpp ReadAlign_chimericDetectionOld.cpp Parameters_closeReadsFiles.cpp sjAlignSplit.cpp
Genome_genomeGenerate.cpp signalFromBAM.cpp genomeSAindex.cpp stitchGapIndel.cpp TimeFunctions.cpp stitchAlignToTranscript.cpp Transcript_generateCigarP.cpp sjdbLoadFromStream.cpp Quantifications.cpp Parameters_openReadsFiles.cpp ChimericAlign.cpp SoloReadFeature_record.cpp blocksOverlap.cpp ErrorWarning.cpp ReadAlign_outputTranscriptCIGARp.cpp PackedArray.cpp ReadAlignChunk.cpp SoloFeature_processRecords.cpp SoloRead.cpp SoloFeature_outputResults.cpp ReadAlign_alignBAM.cpp ReadAlign_outputAlignments.cpp ReadAlign_calcCIGAR.cpp Transcriptome_quantAlign.cpp SoloReadFeature_getFeature.cpp Solo.cpp BAMbinSortByCoordinate.cpp Parameters_readSAMheader.cpp ReadAlign_waspMap.cpp STAR.cpp SoloFeature.cpp funCompareUintAndSuffixes.cpp ReadAlign_stitchPieces.cpp ChimericSegment.cpp SoloReadFeature_inputRecords.cpp Transcriptome_geneCountsAddAlign.cpp ChimericDetection_chimericDetectionMult.cpp Stats.cpp SoloReadFeature.cpp Variation.cpp readLoad.cpp ChimericAlign_chimericJunctionOutput.cpp R
eadAlign_mapOneRead.cpp ReadAlign_outputTran!
scriptSAM.cpp bamRemoveDuplicates.cpp sjdbBuildIndex.cpp Chain.cpp genomeScanFastaFiles.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_peOverlapMergeMap.cpp sjdbLoadFromFiles.cpp OutSJ.cpp ChimericAlign_chimericStitching.cpp BAMfunctions.cpp Transcript_alignScore.cpp extendAlign.cpp alignSmithWaterman.cpp SuffixArrayFuns.cpp Transcript_variationOutput.cpp SoloReadBarcode_getCBandUMI.cpp ReadAlign_mappedFilter.cpp ReadAlign_oneRead.cpp sjdbPrepare.cpp SharedMemory.cpp ReadAlign_stitchWindowSeeds.cpp BAMoutput.cpp ReadAlign_storeAligns.cpp Transcript_variationAdjust.cpp sysRemoveDir.cpp ThreadControl.cpp Transcript.cpp bam_cat.c
'rm' -f ./Depend.list
c++ -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Fri May 3 14:06:49 UTC 2019 :/wrkdirs/usr/ports/biology/star/work/STAR-2.7.0f/source"' -MM ChimericDetection.cpp stringSubstituteAll.cpp InOutStreams.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_assignAlignToWindow.cpp loadGTF.cpp mapThreadsSpawn.cpp ReadAlign.cpp SequenceFuns.cpp funCompareUintAndSuffixesMemcmp.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ParametersSolo.cpp ReadAlign_CIGAR.cpp SoloReadBarcode.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_multMapSelect.cpp genomeParametersWrite.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlignChunk_processChunks.cpp streamFuns.cpp insertSeqSA.cpp BAMbinSortUnmapped.cpp Genome.cpp sjdbInsertJunctions.cpp Genome_insertSequences.cpp binarySearch2.cpp serviceFuns.cpp ReadAlignChunk_mapChunk.cpp ReadAlign_maxMappableLength2strands.cpp outputSJ.cpp SoloRead_record.cpp ReadAlign_chimericDetection.cpp Transcriptome.cpp Parameters.c
pp GlobalVariables.cpp stitchWindowAligns.cpp SoloFeature_collapseUMI.cpp ReadAlign_chimericDetectionOld.cpp Parameters_closeReadsFiles.cpp sjAlignSplit.cpp Genome_genomeGenerate.cpp signalFromBAM.cpp genomeSAindex.cpp stitchGapIndel.cpp TimeFunctions.cpp stitchAlignToTranscript.cpp Transcript_generateCigarP.cpp sjdbLoadFromStream.cpp Quantifications.cpp Parameters_openReadsFiles.cpp ChimericAlign.cpp SoloReadFeature_record.cpp blocksOverlap.cpp ErrorWarning.cpp ReadAlign_outputTranscriptCIGARp.cpp PackedArray.cpp ReadAlignChunk.cpp SoloFeature_processRecords.cpp SoloRead.cpp SoloFeature_outputResults.cpp ReadAlign_alignBAM.cpp ReadAlign_outputAlignments.cpp ReadAlign_calcCIGAR.cpp Transcriptome_quantAlign.cpp SoloReadFeature_getFeature.cpp Solo.cpp BAMbinSortByCoordinate.cpp Parameters_readSAMheader.cpp ReadAlign_waspMap.cpp STAR.cpp SoloFeature.cpp funCompareUintAndSuffixes.cpp ReadAlign_stitchPieces.cpp ChimericSegment.cpp SoloReadFeature_inputRecords.cpp Transcriptome_geneCounts
AddAlign.cpp ChimericDetection_chimericDetec!
tionMult.cpp Stats.cpp SoloReadFeature.cpp Variation.cpp readLoad.cpp ChimericAlign_chimericJunctionOutput.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp bamRemoveDuplicates.cpp sjdbBuildIndex.cpp Chain.cpp genomeScanFastaFiles.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_peOverlapMergeMap.cpp sjdbLoadFromFiles.cpp OutSJ.cpp ChimericAlign_chimericStitching.cpp BAMfunctions.cpp Transcript_alignScore.cpp extendAlign.cpp alignSmithWaterman.cpp SuffixArrayFuns.cpp Transcript_variationOutput.cpp SoloReadBarcode_getCBandUMI.cpp ReadAlign_mappedFilter.cpp ReadAlign_oneRead.cpp sjdbPrepare.cpp SharedMemory.cpp ReadAlign_stitchWindowSeeds.cpp BAMoutput.cpp ReadAlign_storeAligns.cpp Transcript_variationAdjust.cpp sysRemoveDir.cpp ThreadControl.cpp Transcript.cpp bam_cat.c parametersDefault.xxd htslib >> Depend.list
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
cc1plus: error: unrecognized command line option "-std=c++11"
Makefile:100: Depend.list: No such file or directory
gmake[1]: *** [Makefile:99: Depend.list] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/star/work/STAR-2.7.0f/source'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/star
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