[package - head-powerpc64-default][science/sparta] Failed for sparta-dsmc-2018.10.29_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sat Mar 16 02:21:34 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/science/sparta/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p495681_s345110/logs/sparta-dsmc-2018.10.29_1.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p495681_s345110
Log:
=>> Building science/sparta
build started at Sat Mar 16 02:19:59 UTC 2019
port directory: /usr/ports/science/sparta
package name: sparta-dsmc-2018.10.29_1
building for: FreeBSD head-powerpc64-default-job-10 13.0-CURRENT FreeBSD 13.0-CURRENT 1300014 powerpc
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/sparta/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300012
Jail OSVERSION: 1300014
Job Id: 10
!!! Jail is newer than host. (Jail: 1300014, Host: 1300012) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300014
UNAME_v=FreeBSD 13.0-CURRENT 1300014
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-3-g02cc9753
MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-powerpc64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for sparta-dsmc-2018.10.29_1:
====> Parallelization: you have to select exactly one of them
SERIAL=off: Serial: no parallelization
MPI=on: MPI (Message Passing Interface) support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/sparta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/sparta/work HOME=/wrkdirs/usr/ports/science/sparta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/sparta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/sparta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/sparta/work HOME=/wrkdirs/usr/ports/science/sparta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/sparta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/mpi/openmpi/lib/libmpi.so -Wl,-rpath=/usr/local/mpi/openmpi/lib " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -DSPARTA_UNORDERED_MAP -I/usr/local/mpi/openmpi/include -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_IN
STALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/sparta" EXAMPLESDIR="share/examples/sparta" DATADIR="share/sparta" WWWDIR="www/sparta" ETCDIR="etc/sparta"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sparta DOCSDIR=/usr/local/share/doc/sparta EXAMPLESDIR=/usr/local/share/examples/sparta WWWDIR=/usr/local/www/sparta ETCDIR=/usr/local/etc/sparta
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT= true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300014
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> sparta-dsmc-2018.10.29_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-powerpc64-default-job-10] Installing pkg-1.10.5_5...
[head-powerpc64-default-job-10] Extracting pkg-1.10.5_5: .......... done
===> sparta-dsmc-2018.10.29_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of sparta-dsmc-2018.10.29_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by sparta-dsmc-2018.10.29_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by sparta-dsmc-2018.10.29_1 for building
=> SHA256 Checksum OK for sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by sparta-dsmc-2018.10.29_1 for building
===> Extracting for sparta-dsmc-2018.10.29_1
=> SHA256 Checksum OK for sparta-sparta-2018.10.29-29Oct2018_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for sparta-dsmc-2018.10.29_1
===> Applying FreeBSD patches for sparta-dsmc-2018.10.29_1
===========================================================================
=======================<phase: build-depends >============================
===> sparta-dsmc-2018.10.29_1 depends on executable: bash - not found
===> Installing existing package /packages/All/bash-5.0.2.txz
[head-powerpc64-default-job-10] Installing bash-5.0.2...
[head-powerpc64-default-job-10] `-- Installing gettext-runtime-0.19.8.1_2...
[head-powerpc64-default-job-10] | `-- Installing indexinfo-0.3.1...
[head-powerpc64-default-job-10] | `-- Extracting indexinfo-0.3.1: .... done
[head-powerpc64-default-job-10] `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[head-powerpc64-default-job-10] Extracting bash-5.0.2: .......... done
===> sparta-dsmc-2018.10.29_1 depends on executable: bash - found
===> Returning to build of sparta-dsmc-2018.10.29_1
===> sparta-dsmc-2018.10.29_1 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-powerpc64-default-job-10] Installing gmake-4.2.1_3...
[head-powerpc64-default-job-10] Extracting gmake-4.2.1_3: .......... done
===> sparta-dsmc-2018.10.29_1 depends on executable: gmake - found
===> Returning to build of sparta-dsmc-2018.10.29_1
===========================================================================
=======================<phase: lib-depends >============================
===> sparta-dsmc-2018.10.29_1 depends on shared library: libmpi.so - not found
===> Installing existing package /packages/All/openmpi-1.10.7_4.txz
[head-powerpc64-default-job-10] Installing openmpi-1.10.7_4...
[head-powerpc64-default-job-10] `-- Installing gcc8-8.3.0...
[head-powerpc64-default-job-10] | `-- Installing binutils-2.32,1...
[head-powerpc64-default-job-10] | `-- Extracting binutils-2.32,1: .......... done
[head-powerpc64-default-job-10] | `-- Installing gcc5-5.5.0_6...
[head-powerpc64-default-job-10] | | `-- Installing gmp-6.1.2_1...
[head-powerpc64-default-job-10] | | `-- Extracting gmp-6.1.2_1: .......... done
[head-powerpc64-default-job-10] | | `-- Installing mpc-1.1.0_2...
[head-powerpc64-default-job-10] | | `-- Installing mpfr-4.0.2...
[head-powerpc64-default-job-10] | | `-- Extracting mpfr-4.0.2: .......... done
[head-powerpc64-default-job-10] | | `-- Extracting mpc-1.1.0_2: ......... done
[head-powerpc64-default-job-10] | `-- Extracting gcc5-5.5.0_6: .......... done
[head-powerpc64-default-job-10] `-- Extracting gcc8-8.3.0: .......... done
[head-powerpc64-default-job-10] `-- Installing hwloc-1.11.11...
[head-powerpc64-default-job-10] | `-- Installing libpciaccess-0.13.5...
[head-powerpc64-default-job-10] | | `-- Installing pciids-20190213...
[head-powerpc64-default-job-10] | | `-- Extracting pciids-20190213: ..... done
[head-powerpc64-default-job-10] | `-- Extracting libpciaccess-0.13.5: ......... done
[head-powerpc64-default-job-10] | `-- Installing libxml2-2.9.8...
[head-powerpc64-default-job-10] | `-- Extracting libxml2-2.9.8: .......... done
[head-powerpc64-default-job-10] `-- Extracting hwloc-1.11.11: .......... done
[head-powerpc64-default-job-10] `-- Installing libevent-2.1.8_2...
[head-powerpc64-default-job-10] `-- Extracting libevent-2.1.8_2: .......... done
[head-powerpc64-default-job-10] `-- Installing libltdl-2.4.6...
[head-powerpc64-default-job-10] `-- Extracting libltdl-2.4.6: .......... done
[head-powerpc64-default-job-10] `-- Installing slurm-wlm-17.02.11_2...
[head-powerpc64-default-job-10] | `-- Installing hdf-szip-2.1.1...
[head-powerpc64-default-job-10] | `-- Extracting hdf-szip-2.1.1: .......... done
[head-powerpc64-default-job-10] | `-- Installing hdf5-1.10.4...
[head-powerpc64-default-job-10] | `-- Extracting hdf5-1.10.4: .......... done
[head-powerpc64-default-job-10] | `-- Installing json-c-0.13.1...
[head-powerpc64-default-job-10] | `-- Extracting json-c-0.13.1: .......... done
[head-powerpc64-default-job-10] | `-- Installing liblz4-1.8.3,1...
[head-powerpc64-default-job-10] | `-- Extracting liblz4-1.8.3,1: .......... done
[head-powerpc64-default-job-10] | `-- Installing libsysinfo-0.0.3_2...
[head-powerpc64-default-job-10] | `-- Extracting libsysinfo-0.0.3_2: ......... done
[head-powerpc64-default-job-10] | `-- Installing munge-0.5.13_1...
[head-powerpc64-default-job-10] | | `-- Installing perl5-5.28.1...
[head-powerpc64-default-job-10] | | `-- Extracting perl5-5.28.1: .......... done
[head-powerpc64-default-job-10] | `-- Extracting munge-0.5.13_1: ......... done
[head-powerpc64-default-job-10] | `-- Installing readline-7.0.5...
[head-powerpc64-default-job-10] | `-- Extracting readline-7.0.5: .......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[head-powerpc64-default-job-10] `-- Extracting slurm-wlm-17.02.11_2: .......... done
[head-powerpc64-default-job-10] Extracting openmpi-1.10.7_4: .......... done
Message from gcc5-5.5.0_6:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc5
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Unsupported by upstream. Use GCC 7 or newer instead..
Message from gcc8-8.3.0:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc8
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from perl5-5.28.1:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===> sparta-dsmc-2018.10.29_1 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so)
===> Returning to build of sparta-dsmc-2018.10.29_1
===========================================================================
=======================<phase: configure >============================
===> Configuring for sparta-dsmc-2018.10.29_1
===========================================================================
=======================<phase: build >============================
===> Building for sparta-dsmc-2018.10.29_1
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src'
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src/Obj_mpi'
c++ -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -DSPARTA_UNORDERED_MAP -I/usr/local/mpi/openmpi/include -isystem /usr/local/include -DSPARTA_GZIP -M ../fix_ave_time.cpp > fix_ave_time.d
c++ -O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -DSPARTA_UNORDERED_MAP -I/usr/local/mpi/openmpi/include -isystem /usr/local/include -DSPARTA_GZIP -M ../compute_thermal_grid.cpp > compute_thermal_grid.d
In file included from ../compute_thermal_grid.cpp:21:
./grid.h:24:25: error: unordered_map: No such file or directory
Makefile:105: compute_thermal_grid.d: No such file or directory
gmake[2]: *** [Makefile:100: compute_thermal_grid.d] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src/Obj_mpi'
gmake[1]: *** [Makefile:102: mpi] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/sparta/work/sparta-29Oct2018/src'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/sparta
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