[package - 120armv7-quarterly][science/py-mlpy] Failed for py36-mlpy-3.5.0_7 in configure

Mon Mar 11 11:17:54 UTC 2019

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     wen at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident:          $FreeBSD: branches/2019Q1/science/py-mlpy/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/495215/logs/py36-mlpy-3.5.0_7.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=495215
Log:

=>> Building science/py-mlpy
build started at Mon Mar 11 11:17:24 UTC 2019
port directory: /usr/ports/science/py-mlpy
package name: py36-mlpy-3.5.0_7
building for: FreeBSD 120armv7-quarterly-job-08 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm
maintained by: wen at FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q1/science/py-mlpy/Makefile 487272 2018-12-12 01:35:33Z gerald $
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=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-mlpy-3.5.0_7 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv7-quarterly-job-08] Installing pkg-1.10.5_5...
[120armv7-quarterly-job-08] Extracting pkg-1.10.5_5: .......... done
===>   py36-mlpy-3.5.0_7 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-mlpy-3.5.0_7
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by py36-mlpy-3.5.0_7 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by py36-mlpy-3.5.0_7 for building
=> SHA256 Checksum OK for mlpy-3.5.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by py36-mlpy-3.5.0_7 for building
===>  Extracting for py36-mlpy-3.5.0_7
=> SHA256 Checksum OK for mlpy-3.5.0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py36-mlpy-3.5.0_7
===========================================================================
=======================<phase: build-depends  >============================
===>   py36-mlpy-3.5.0_7 depends on package: py36-numpy>0 - not found
===>   Installing existing package /packages/All/py36-numpy-1.15.4_1,1.txz
[120armv7-quarterly-job-08] Installing py36-numpy-1.15.4_1,1...
[120armv7-quarterly-job-08] `-- Installing blas-3.5.0_5...
[120armv7-quarterly-job-08] |   `-- Installing gcc8-8.2.0_4...
[120armv7-quarterly-job-08] |   | `-- Installing binutils-2.30_7,1...
[120armv7-quarterly-job-08] |   |   `-- Installing gettext-runtime-0.19.8.1_2...
[120armv7-quarterly-job-08] |   |   | `-- Installing indexinfo-0.3.1...
[120armv7-quarterly-job-08] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[120armv7-quarterly-job-08] |   |   `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[120armv7-quarterly-job-08] |   | `-- Extracting binutils-2.30_7,1: .......... done
[120armv7-quarterly-job-08] |   | `-- Installing gmp-6.1.2_1...
[120armv7-quarterly-job-08] |   | `-- Extracting gmp-6.1.2_1: .......... done
[120armv7-quarterly-job-08] |   | `-- Installing mpc-1.1.0_2...
[120armv7-quarterly-job-08] |   |   `-- Installing mpfr-4.0.1_2...
[120armv7-quarterly-job-08] |   |   `-- Extracting mpfr-4.0.1_2: .......... done
[120armv7-quarterly-job-08] |   | `-- Extracting mpc-1.1.0_2: ......... done
[120armv7-quarterly-job-08] |   `-- Extracting gcc8-8.2.0_4: .......... done
[120armv7-quarterly-job-08] `-- Extracting blas-3.5.0_5: ....... done
[120armv7-quarterly-job-08] `-- Installing cblas-1.0_10...
[120armv7-quarterly-job-08] `-- Extracting cblas-1.0_10: ......... done
[120armv7-quarterly-job-08] `-- Installing lapack-3.5.0_6...
[120armv7-quarterly-job-08] `-- Extracting lapack-3.5.0_6: .......... done
[120armv7-quarterly-job-08] `-- Installing py36-setuptools-40.6.2...
[120armv7-quarterly-job-08] |   `-- Installing python36-3.6.7...
[120armv7-quarterly-job-08] |   | `-- Installing libffi-3.2.1_3...
[120armv7-quarterly-job-08] |   | `-- Extracting libffi-3.2.1_3: .......... done
[120armv7-quarterly-job-08] |   | `-- Installing readline-7.0.5...
[120armv7-quarterly-job-08] |   | `-- Extracting readline-7.0.5: .......... done
[120armv7-quarterly-job-08] |   `-- Extracting python36-3.6.7: .......... done
[120armv7-quarterly-job-08] `-- Extracting py36-setuptools-40.6.2: .......... done
[120armv7-quarterly-job-08] `-- Installing suitesparse-5.2.0_2...
[120armv7-quarterly-job-08] |   `-- Installing metis-5.1.0_6...
[120armv7-quarterly-job-08] |   `-- Extracting metis-5.1.0_6: .......... done
[120armv7-quarterly-job-08] |   `-- Installing openblas-0.2.20_7,1...
[120armv7-quarterly-job-08] |   `-- Extracting openblas-0.2.20_7,1: ......... done
[120armv7-quarterly-job-08] `-- Extracting suitesparse-5.2.0_2: .......... done
[120armv7-quarterly-job-08] Extracting py36-numpy-1.15.4_1,1: .......... done
Message from gcc8-8.2.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_10:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.7:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm at py36
py36-sqlite3    databases/py-sqlite3 at py36
py36-tkinter    x11-toolkits/py-tkinter at py36

===========================================================================
Message from py36-setuptools-40.6.2:

*******************************************************************

  Only /usr/local/bin/easy_install-3.6 script has been installed
  since Python 3.6 is not the default Python version.

*******************************************************************
Message from metis-5.1.0_6:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   py36-mlpy-3.5.0_7 depends on package: py36-numpy>0 - found
===>   Returning to build of py36-mlpy-3.5.0_7
===>   py36-mlpy-3.5.0_7 depends on executable: cython-3.6 - not found
===>   Installing existing package /packages/All/py36-cython-0.29.txz
[120armv7-quarterly-job-08] Installing py36-cython-0.29...
[120armv7-quarterly-job-08] Extracting py36-cython-0.29: .......... done
===>   py36-mlpy-3.5.0_7 depends on executable: cython-3.6 - found
===>   Returning to build of py36-mlpy-3.5.0_7
===>   py36-mlpy-3.5.0_7 depends on package: py36-setuptools>0 - found
===>   py36-mlpy-3.5.0_7 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py36-mlpy-3.5.0_7 depends on shared library: libgsl.so - not found
===>   Installing existing package /packages/All/gsl-2.5_1.txz
[120armv7-quarterly-job-08] Installing gsl-2.5_1...
[120armv7-quarterly-job-08] Extracting gsl-2.5_1: .......... done
===>   py36-mlpy-3.5.0_7 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so)
===>   Returning to build of py36-mlpy-3.5.0_7
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-mlpy-3.5.0_7
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 6, in <module>
    import numpy
  File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import add_newdocs
  File "/usr/local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
    raise ImportError(msg)
ImportError: 
Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control).  Otherwise reinstall numpy.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"

*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-mlpy