[package - 120powerpc64-quarterly][science/py-rmf] Failed for py27-rmf-1.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Feb 14 15:54:15 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: tcberner at FreeBSD.org
Ident: $FreeBSD: branches/2019Q1/science/py-rmf/Makefile 488341 2018-12-25 20:25:39Z tcberner $
Log URL: http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/492798/logs/py27-rmf-1.1.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=492798
Log:
=>> Building science/py-rmf
build started at Thu Feb 14 15:45:17 UTC 2019
port directory: /usr/ports/science/py-rmf
package name: py27-rmf-1.1
building for: FreeBSD 120powerpc64-quarterly-job-05 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 powerpc
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2019Q1/science/py-rmf/Makefile 488341 2018-12-25 20:25:39Z tcberner $
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-rmf-1.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[120powerpc64-quarterly-job-05] Installing pkg-1.10.5_5...
[120powerpc64-quarterly-job-05] Extracting pkg-1.10.5_5: .......... done
===> py27-rmf-1.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-rmf-1.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py27-rmf-1.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py27-rmf-1.1 for building
=> SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py27-rmf-1.1 for building
===> Extracting for py27-rmf-1.1
=> SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py27-rmf-1.1
===> Applying FreeBSD patches for py27-rmf-1.1
===========================================================================
=======================<phase: build-depends >============================
===> py27-rmf-1.1 depends on executable: swig3.0 - not found
===> Installing existing package /packages/All/swig30-3.0.12.txz
[120powerpc64-quarterly-job-05] Installing swig30-3.0.12...
[120powerpc64-quarterly-job-05] `-- Installing lua52-5.2.4...
[120powerpc64-quarterly-job-05] | `-- Installing libedit-3.1.20170329_2,1...
[120powerpc64-quarterly-job-05] | `-- Extracting libedit-3.1.20170329_2,1: .......... done
[120powerpc64-quarterly-job-05] `-- Extracting lua52-5.2.4: ......... done
[120powerpc64-quarterly-job-05] `-- Installing pcre-8.42_1...
[120powerpc64-quarterly-job-05] | `-- Installing gcc8-8.2.0_4...
[120powerpc64-quarterly-job-05] | | `-- Installing binutils-2.30_7,1...
[120powerpc64-quarterly-job-05] | | `-- Installing gettext-runtime-0.19.8.1_2...
[120powerpc64-quarterly-job-05] | | | `-- Installing indexinfo-0.3.1...
[120powerpc64-quarterly-job-05] | | | `-- Extracting indexinfo-0.3.1: .... done
[120powerpc64-quarterly-job-05] | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
<snip>
[120powerpc64-quarterly-job-05] `-- Extracting libuv-1.24.1: .......... done
[120powerpc64-quarterly-job-05] `-- Installing rhash-1.3.5...
[120powerpc64-quarterly-job-05] `-- Extracting rhash-1.3.5: .......... done
[120powerpc64-quarterly-job-05] Extracting cmake-3.13.2: .......... done
Message from ca_root_nss-3.42.1:
********************************* WARNING *********************************
FreeBSD does not, and can not warrant that the certification authorities
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audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
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This package installs symlinks to support root certificates discovery by
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This enables SSL Certificate Verification by client software without manual
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If you prefer to do this manually, replace the following symlinks with
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* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
***************************************************************************
===> py27-rmf-1.1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of py27-rmf-1.1
===> py27-rmf-1.1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.8.2_1,2.txz
[120powerpc64-quarterly-job-05] Installing ninja-1.8.2_1,2...
[120powerpc64-quarterly-job-05] `-- Installing python27-2.7.15...
[120powerpc64-quarterly-job-05] | `-- Installing libffi-3.2.1_3...
[120powerpc64-quarterly-job-05] | `-- Extracting libffi-3.2.1_3: .......... done
[120powerpc64-quarterly-job-05] | `-- Installing readline-7.0.5...
[120powerpc64-quarterly-job-05] | `-- Extracting readline-7.0.5: .......... done
[120powerpc64-quarterly-job-05] `-- Extracting python27-2.7.15: .......... done
[120powerpc64-quarterly-job-05] Extracting ninja-1.8.2_1,2: ......... done
Message from python27-2.7.15:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
===========================================================================
===> py27-rmf-1.1 depends on executable: ninja - found
===> Returning to build of py27-rmf-1.1
===> py27-rmf-1.1 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends >============================
===> py27-rmf-1.1 depends on shared library: libRMF.so - not found
===> Installing existing package /packages/All/rmf-1.1_3.txz
[120powerpc64-quarterly-job-05] Installing rmf-1.1_3...
[120powerpc64-quarterly-job-05] `-- Installing boost-libs-1.69.0...
[120powerpc64-quarterly-job-05] | `-- Installing icu-63.1_1,1...
[120powerpc64-quarterly-job-05] | `-- Extracting icu-63.1_1,1: .......... done
[120powerpc64-quarterly-job-05] `-- Extracting boost-libs-1.69.0: .......... done
[120powerpc64-quarterly-job-05] `-- Installing hdf-szip-2.1_2...
[120powerpc64-quarterly-job-05] `-- Extracting hdf-szip-2.1_2: .......... done
[120powerpc64-quarterly-job-05] `-- Installing hdf5-1.10.2_1...
[120powerpc64-quarterly-job-05] `-- Extracting hdf5-1.10.2_1: .......... done
[120powerpc64-quarterly-job-05] Extracting rmf-1.1_3: .......... done
Message from boost-libs-1.69.0:
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> py27-rmf-1.1 depends on shared library: libRMF.so - found (/usr/local/lib/libRMF.so)
===> Returning to build of py27-rmf-1.1
===========================================================================
=======================<phase: configure >============================
===> Configuring for py27-rmf-1.1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/py-rmf/work-py27/.build
-- The C compiler identification is GNU 4.2.1
-- The CXX compiler identification is GNU 4.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Boost version: 1.69.0
-- Found the following Boost libraries:
-- system
-- filesystem
-- thread
-- program_options
-- iostreams
-- chrono
-- date_time
-- atomic
-- regex
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.2")
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.2", minimum required is "1.8")
-- Deprecated backends (and hdf5) are enabled
-- GCC version: 4.2.1
-- GCC version: 4.2.1
-- Running Making RMF/HDF5.h
-- Updating /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/include/RMF/HDF5.h
-- Running Making RMF.h
-- Updating /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/include/RMF.h
-- Running setup_cmake.py
-- Running Running setup_cmake.py
-- Updating ./bin/Files.cmake
Updating ./examples/Files.cmake
Updating ./benchmark/Files.cmake
Updating ./tools/dev_tools/test/Files.cmake
Updating ./src/Files.cmake
Updating ./test/Files.cmake
-- Logging disabled
-- Found SWIG: /usr/local/bin/swig3.0 (found suitable version "3.0.12", minimum required is "1.3.40")
-- Python binary is /wrkdirs/usr/ports/science/py-rmf/work-py27/.bin/python (version 2.7.15)
-- Found PythonLibs: /usr/local/lib/libpython2.7.so (found suitable exact version "2.7.15")
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:564 (message):
Policy CMP0078 is not set. Run "cmake --help-policy CMP0078" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Call Stack (most recent call first):
swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:564 (message):
Policy CMP0078 is not set. Run "cmake --help-policy CMP0078" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Call Stack (most recent call first):
swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_EXE_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/science/py-rmf/work-py27/.build
===========================================================================
=======================<phase: build >============================
===> Building for py27-rmf-1.1
[1/7] cd /wrkdirs/usr/ports/science/py-rmf/work-py27/.build && python /wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/tools/build/make_decorators.py
[2/7] cd /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/swig && /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/3.0.12 /usr/local/bin/swig3.0 -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_HDF5_PySwigIterator -c++ -DSwigPyIterator=RMF_HDF5_SwigPyIterator -DRMFEXPORT -outdir /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib -c++ -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/include -I/wrkdirs/usr/ports/science/py-rmf/work-py27/.build/include -I/usr/local/include -I/usr/local/include/python2.7 -o /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib/RMF_HDF5PYTHON_wrap.cxx /wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig/RMF_HDF5.i
[3/7] /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_HDF5_EXPORTS -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/include -Iinclude -I/usr/local/include -I/usr/local/include/python2.7 -O2 -pipe -fno-strict-aliasing -O2 -pipe -fno-strict-aliasing -fPIC -MD -MT swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -MF swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o.d -o swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -c lib/RMF_HDF5PYTHON_wrap.cxx
lib/RMF_HDF5PYTHON_wrap.cxx:3403: warning: unknown option after '#pragma GCC diagnostic' kind
lib/RMF_HDF5PYTHON_wrap.cxx:3406: warning: unknown option after '#pragma GCC diagnostic' kind
[4/7] : && /usr/bin/c++ -fPIC -O2 -pipe -fno-strict-aliasing -O2 -pipe -fno-strict-aliasing -lRMF -shared -o lib/_RMF_HDF5.so swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -L/usr/local/lib -Wl,-rpath,:::::::::::::: && :
[5/7] cd /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/swig && /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/3.0.12 /usr/local/bin/swig3.0 -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_PySwigIterator -c++ -DSwigPyIterator=RMF_SwigPyIterator -DRMFEXPORT -outdir /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib -c++ -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/include -I/wrkdirs/usr/ports/science/py-rmf/work-py27/.build/include -I/usr/local/include -I/usr/local/include/python2.7 -o /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib/RMFPYTHON_wrap.cxx /wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig/RMF.i
/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/include/RMF/BufferConstHandle.h:48: Warning 467: Overloaded method RMF::BufferConstHandle::BufferConstHandle(std::vector< char,std::allocator< char > > const &) not supported (incomplete type checking rule - no precedence level in typecheck typemap for 'std::vector< char,std::allocator< char > > const &').
[6/7] /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_EXPORTS -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/include -Iinclude -I/usr/local/include -I/usr/local/include/python2.7 -O2 -pipe -fno-strict-aliasing -O2 -pipe -fno-strict-aliasing -fPIC -MD -MT swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -MF swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o.d -o swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -c lib/RMFPYTHON_wrap.cxx
lib/RMFPYTHON_wrap.cxx:3918: warning: unknown option after '#pragma GCC diagnostic' kind
lib/RMFPYTHON_wrap.cxx:3921: warning: unknown option after '#pragma GCC diagnostic' kind
[7/7] : && /usr/bin/c++ -fPIC -O2 -pipe -fno-strict-aliasing -O2 -pipe -fno-strict-aliasing -lRMF -shared -o lib/_RMF.so swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -L/usr/local/lib -Wl,-rpath,:::::::::::::: && :
FAILED: lib/_RMF.so
: && /usr/bin/c++ -fPIC -O2 -pipe -fno-strict-aliasing -O2 -pipe -fno-strict-aliasing -lRMF -shared -o lib/_RMF.so swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -L/usr/local/lib -Wl,-rpath,:::::::::::::: && :
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26c1c2): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10008
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26c4ca): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10000
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26c742): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10010
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26ca4e): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10018
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26cc06): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10020
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26ceee): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10028
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26d092): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10030
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26d1a2): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10040
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26d4aa): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10038
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26d722): relocation truncated to fit: R_PPC64_TOC16_DS against `.got'+10048
swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o:(.text+0x26da0a): additional relocation overflows omitted from the output
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-rmf
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