[package - head-arm64-default][biology/cytoscape] Failed for cytoscape-3.6.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Aug 17 20:37:40 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/biology/cytoscape/Makefile 473806 2018-07-03 08:42:54Z yuri $
Log URL: http://thunderx1.nyi.freebsd.org/data/head-arm64-default/p476857_s337595/logs/cytoscape-3.6.1.log
Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=head-arm64-default&build=p476857_s337595
Log:
=>> Building biology/cytoscape
build started at Fri Aug 17 18:39:54 UTC 2018
port directory: /usr/ports/biology/cytoscape
package name: cytoscape-3.6.1
building for: FreeBSD head-arm64-default-job-16 12.0-ALPHA1 FreeBSD 12.0-ALPHA1 1200077 arm64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/cytoscape/Makefile 473806 2018-07-03 08:42:54Z yuri $
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!!! Jail is newer than host. (Jail: 1200077, Host: 1200072) !!!
!!! This is not supported. !!!
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yuri at FreeBSD.org
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_1.txz
[head-arm64-default-job-16] Installing pkg-1.10.5_1...
[head-arm64-default-job-16] Extracting pkg-1.10.5_1: .......... done
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cytoscape-3.6.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===> Extracting for cytoscape-3.6.1
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
<snip>
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[[1;34mINFO[m]
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[[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.pom
[[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1-sources.jar
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[[1;34mINFO[m] Writing OBR metadata
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[[1;34mINFO[m] [1m-----------------< [0;36morg.cytoscape.distribution:parent[0;1m >------------------[m
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[[1;34mINFO[m]
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[[1;34mINFO[m] [1mBuilding Cytoscape Third-Party Dependencies (third-party) 3.6.1 [76/117][m
[[1;34mINFO[m] [1m-------------------------------[ bundle ]-------------------------------[m
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[[1;34mINFO[m]
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[[1;34mINFO[m] [1m------------------------------------------------------------------------[m
[[1;34mINFO[m] [1mReactor Summary:[m
[[1;34mINFO[m]
[[1;34mINFO[m] Basic Cytoscape POM Configuration .................. [1;32mSUCCESS[m [ 14.365 s]
[[1;34mINFO[m] Cytoscape API Parent Project POM ................... [1;32mSUCCESS[m [01:53 min]
[[1;34mINFO[m] Cytoscape Documentation Taglets .................... [1;32mSUCCESS[m [ 51.213 s]
[[1;34mINFO[m] Cytoscape Event API (event-api) .................... [1;32mSUCCESS[m [01:34 min]
[[1;34mINFO[m] Cytoscape Model API (model-api) .................... [1;32mSUCCESS[m [01:33 min]
[[1;34mINFO[m] Cytoscape Service API (service-api) ................ [1;32mSUCCESS[m [01:13 min]
[[1;34mINFO[m] Cytoscape View Model API (viewmodel-api) ........... [1;32mSUCCESS[m [01:13 min]
[[1;34mINFO[m] Cytoscape CI API (ci-api) .......................... [1;32mSUCCESS[m [01:13 min]
[[1;34mINFO[m] Cytoscape Work API (work-api) ...................... [1;32mSUCCESS[m [01:36 min]
[[1;34mINFO[m] Cytoscape Presentation API (presentation-api) ...... [1;32mSUCCESS[m [01:43 min]
[[1;34mINFO[m] Cytoscape Application API (application-api) ........ [1;32mSUCCESS[m [01:07 min]
[[1;34mINFO[m] Cytoscape Property API (property-api) .............. [1;32mSUCCESS[m [01:08 min]
[[1;34mINFO[m] Cytoscape VizMap API (vizmap-api) .................. [1;32mSUCCESS[m [01:02 min]
[[1;34mINFO[m] Cytoscape Session API (session-api) ................ [1;32mSUCCESS[m [01:07 min]
[[1;34mINFO[m] Cytoscape Filter API (filter-api) .................. [1;32mSUCCESS[m [01:04 min]
[[1;34mINFO[m] Cytoscape IO API (io-api) .......................... [1;32mSUCCESS[m [01:13 min]
[[1;34mINFO[m] Cytoscape Core Task API (core-task-api) ............ [1;32mSUCCESS[m [01:14 min]
[[1;34mINFO[m] Cytoscape Equations API (equations-api) ............ [1;32mSUCCESS[m [01:09 min]
[[1;34mINFO[m] Cytoscape Layout API (layout-api) .................. [1;32mSUCCESS[m [01:17 min]
[[1;34mINFO[m] Cytoscape Groups API (group-api) ................... [1;32mSUCCESS[m [01:18 min]
[[1;34mINFO[m] Cytoscape Groups API (jobs-api) .................... [1;32mSUCCESS[m [01:00 min]
[[1;34mINFO[m] Cytoscape Webservice API (webservice-api) .......... [1;32mSUCCESS[m [ 58.516 s]
[[1;34mINFO[m] Cytoscape Data Source API (datasource-api) ......... [1;32mSUCCESS[m [01:15 min]
[[1;34mINFO[m] Cytoscape Command Executor API (command-executor-api) [1;32mSUCCESS[m [01:05 min]
[[1;34mINFO[m] Cytoscape App API (app-api) ........................ [1;31mFAILURE[m [09:42 min]
[[1;34mINFO[m] Cytoscape Work Swing API (work-swing-api) .......... [1;32mSUCCESS[m [01:21 min]
[[1;34mINFO[m] Cytoscape Swing Application API (swing-application-api) [1;32mSUCCESS[m [01:15 min]
[[1;34mINFO[m] Cytoscape VizMap GUI API (vizmap-gui-api) .......... [1;32mSUCCESS[m [01:13 min]
[[1;34mINFO[m] Cytoscape Swing Utility API (swing-util-api) ....... [1;32mSUCCESS[m [01:44 min]
[[1;34mINFO[m] Cytoscape Webservice Swing API (webservice-swing-api) [1;32mSUCCESS[m [01:13 min]
[[1;34mINFO[m] Cytoscape Swing App API (swing-app-api) ............ [1;33mSKIPPED[m
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[[1;34mINFO[m] Cytoscape API (api-bundle) ......................... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Implementation Parent Project POM ........ [1;32mSUCCESS[m [01:20 min]
[[1;34mINFO[m] Cytoscape Equations Impl (equations-impl) .......... [1;32mSUCCESS[m [01:56 min]
[[1;34mINFO[m] Cytoscape Model Impl Parent (model-impl-parent) .... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Model Impl (model-impl) .................. [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Command Executor Impl (command-executor-impl) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Ding Impl Parent (ding-impl) ............. [1;32mSUCCESS[m [01:16 min]
[[1;34mINFO[m] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape View Model Impl Parent (viewmodel-impl-parent) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape View Model Impl (viewmodel-impl) ......... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Groups Impl (group-impl) ................. [1;33mSKIPPED[m
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[[1;34mINFO[m] Cytoscape Event Impl (event-impl) .................. [1;32mSUCCESS[m [01:18 min]
[[1;34mINFO[m] Cytoscape Filters Impl (filter-impl) ............... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Filters 2 Impl (filter2-impl) ............ [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape IO Impl Parent (io-impl-parent) .......... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape IO Impl (io-impl) ........................ [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Layout Impl (layout-impl) ................ [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Editor Impl (editor-impl) ................ [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Equation Functions Impl (equations-functions-impl) [1;32mSUCCESS[m [01:24 min]
[[1;34mINFO[m] Cytoscape GraphML Impl (graphml-impl) .............. [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape IO Impl Performance (io-impl-performance) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Jobs Impl (jobs-impl) .................... [1;32mSUCCESS[m [01:30 min]
[[1;34mINFO[m] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) [1;32mSUCCESS[m [03:07 min]
[[1;34mINFO[m] Cytoscape JGraph Layout Impl (layout-jgraph-impl) .. [1;32mSUCCESS[m [01:12 min]
[[1;34mINFO[m] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) [1;32mSUCCESS[m [01:08 min]
[[1;34mINFO[m] Cytoscape Linkout Impl (linkout-impl) .............. [1;32mSUCCESS[m [01:16 min]
[[1;34mINFO[m] Cytoscape Log Swing Impl (log-swing-impl) .......... [1;32mSUCCESS[m [01:27 min]
[[1;34mINFO[m] Cytoscape Manual Layout Impl (manual-layout-impl) .. [1;32mSUCCESS[m [02:09 min]
[[1;34mINFO[m] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape App Impl (app-impl) ...................... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Presentation Impl (presentation-impl) .... [1;32mSUCCESS[m [01:13 min]
[[1;34mINFO[m] Cytoscape Property Impl (property-impl) ............ [1;32mSUCCESS[m [01:07 min]
[[1;34mINFO[m] Cytoscape Search Impl (search-impl) ................ [1;32mSUCCESS[m [01:33 min]
[[1;34mINFO[m] Cytoscape Session Impl (session-impl) .............. [1;32mSUCCESS[m [01:33 min]
[[1;34mINFO[m] Cytoscape Swing Utility Impl (swing-util-impl) ..... [1;32mSUCCESS[m [01:23 min]
[[1;34mINFO[m] Cytoscape Swing Application Impl (swing-application-impl) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Table Browser Impl (table-browser-impl) .. [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Table Import Impl (table-import-impl) .... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) [1;32mSUCCESS[m [01:05 min]
[[1;34mINFO[m] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ........ [1;32mSUCCESS[m [05:34 min]
[[1;34mINFO[m] Cytoscape VizMap Impl Parent (vizmap-impl-parent) .. [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape VizMap Impl (vizmap-impl) ................ [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Webservice Impl (webservice-impl) ........ [1;32mSUCCESS[m [01:41 min]
[[1;34mINFO[m] org.cytoscape.work-headless-impl ................... [1;32mSUCCESS[m [01:24 min]
[[1;34mINFO[m] org.cytoscape.work-impl ............................ [1;32mSUCCESS[m [01:47 min]
[[1;34mINFO[m] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) [1;32mSUCCESS[m [01:33 min]
[[1;34mINFO[m] Cytoscape Work Swing Impl (work-swing-impl) ........ [1;32mSUCCESS[m [02:32 min]
[[1;34mINFO[m] Cytoscape Application Impl (application-impl) ...... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Datasource Impl (datasource-impl) ........ [1;32mSUCCESS[m [01:05 min]
[[1;34mINFO[m] Cytoscape Support Parent Project POM ............... [1;32mSUCCESS[m [ 0.535 s]
[[1;34mINFO[m] Cytoscape Launch Framework ......................... [1;32mSUCCESS[m [ 0.440 s]
[[1;34mINFO[m] CommandLine Provider ............................... [1;32mSUCCESS[m [ 50.412 s]
[[1;34mINFO[m] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) [1;32mSUCCESS[m [01:30 min]
[[1;34mINFO[m] Cytoscape Edge Bundler Impl (edge-bundler-impl) .... [1;32mSUCCESS[m [01:15 min]
[[1;34mINFO[m] Cytoscape Scripting Impl (scripting-impl) .......... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Core Task Impl (core-task-impl) .......... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Headless Application Impl (headless-application-impl) [1;32mSUCCESS[m [01:09 min]
[[1;34mINFO[m] org.cytoscape.cy-commons-cli ....................... [1;32mSUCCESS[m [01:09 min]
[[1;34mINFO[m] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) [1;32mSUCCESS[m [01:42 min]
[[1;34mINFO[m] Cytoscape 3 App Archetypes Parent .................. [1;32mSUCCESS[m [ 9.550 s]
[[1;34mINFO[m] Cytoscape 3 Archetype - Creates an App providing public API [1;32mSUCCESS[m [ 10.590 s]
[[1;34mINFO[m] Cytoscape 3 Archetype - Creates an App with a Task . [1;32mSUCCESS[m [ 1.443 s]
[[1;34mINFO[m] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application [1;32mSUCCESS[m [ 2.140 s]
[[1;34mINFO[m] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps [1;32mSUCCESS[m [ 2.328 s]
[[1;34mINFO[m] org.cytoscape.integration-test-support ............. [1;32mSUCCESS[m [01:38 min]
[[1;34mINFO[m] Launcher ........................................... [1;32mSUCCESS[m [ 46.349 s]
[[1;34mINFO[m] StartLevel Assembly ................................ [1;32mSUCCESS[m [ 1.740 s]
[[1;34mINFO[m] Tasks for Testing .................................. [1;32mSUCCESS[m [ 56.806 s]
[[1;34mINFO[m] Cytoscape Desktop Application Distribution ......... [1;32mSUCCESS[m [ 0.476 s]
[[1;34mINFO[m] Cytoscape Third-Party Dependencies (third-party) ... [1;31mFAILURE[m [10:28 min]
[[1;34mINFO[m] SplashScreen Launcher .............................. [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Launcher ................................. [1;33mSKIPPED[m
[[1;34mINFO[m] Splash Updater ..................................... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Command Line Provider Implementation ..... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Diagnostics .............................. [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Branding ................................. [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Application Implementation Metadata ...... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape GUI-Distribution Integration Test (integration-test) [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Feature Repository ....................... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Karaf Distribution ....................... [1;33mSKIPPED[m
[[1;34mINFO[m] Distribution ....................................... [1;33mSKIPPED[m
[[1;34mINFO[m] Cytoscape Project POM 3.6.1 ........................ [1;33mSKIPPED[m
[[1;34mINFO[m] [1m------------------------------------------------------------------------[m
[[1;34mINFO[m] [1;31mBUILD FAILURE[m
[[1;34mINFO[m] [1m------------------------------------------------------------------------[m
[[1;34mINFO[m] Total time: 01:55 h
[[1;34mINFO[m] Finished at: 2018-08-17T20:37:35Z
[[1;34mINFO[m] [1m------------------------------------------------------------------------[m
[[1;31mERROR[m] Java heap space -> [1m[Help 1][m
[[1;31mERROR[m]
[[1;31mERROR[m] To see the full stack trace of the errors, re-run Maven with the [1m-e[m switch.
[[1;31mERROR[m] Re-run Maven using the [1m-X[m switch to enable full debug logging.
[[1;31mERROR[m]
[[1;31mERROR[m] For more information about the errors and possible solutions, please read the following articles:
[[1;31mERROR[m] [1m[Help 1][m http://cwiki.apache.org/confluence/display/MAVEN/OutOfMemoryError
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/cytoscape
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