[package - 111arm64-default][biology/vcflib] Failed for vcflib-1.0.0.r1.130 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Apr 26 07:26:47 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb at FreeBSD.org
Last committer: jwb at FreeBSD.org
Ident: $FreeBSD: head/biology/vcflib/Makefile 467553 2018-04-17 03:11:39Z jwb $
Log URL: http://thunderx1.nyi.freebsd.org/data/111arm64-default/468171/logs/vcflib-1.0.0.r1.130.log
Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=111arm64-default&build=468171
Log:
=>> Building biology/vcflib
build started at Thu Apr 26 07:25:01 UTC 2018
port directory: /usr/ports/biology/vcflib
package name: vcflib-1.0.0.r1.130
building for: FreeBSD 111arm64-default-job-03 11.1-RELEASE FreeBSD 11.1-RELEASE arm64
maintained by: jwb at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/vcflib/Makefile 467553 2018-04-17 03:11:39Z jwb $
Poudriere version: 3.2.6-2-gab7278f5
Host OSVERSION: 1200060
Jail OSVERSION: 1101001
Job Id: 03
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1101001
UNAME_v=FreeBSD 11.1-RELEASE
UNAME_r=11.1-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.6-2-gab7278f5
MASTERMNT=/usr/local/poudriere/data/.m/111arm64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/111arm64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=111arm64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/111arm64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jwb at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='\"1.0.0.r1.130\"'" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/vcflib" EXAMPLESDIR="share/examples/vcflib" DATADIR="share/vcflib" WWWDIR="www/vcflib" ETCDIR="etc/vcflib"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/vcflib DOCSDIR=/usr/local/share/doc/vcflib EXAMPLESDIR=/usr/local/share/examples/vcflib WWWDIR=/usr/local/www/vcflib ETCDIR=/usr/local/etc/vcflib
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: aarch64-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: aarch64-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: aarch64-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=aarch64
OPSYS=FreeBSD
_OSRELEASE=11.1-RELEASE
OSREL=11.1
OSVERSION=1101001
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 1048576
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> vcflib-1.0.0.r1.130 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5.txz
[111arm64-default-job-03] Installing pkg-1.10.5...
[111arm64-default-job-03] Extracting pkg-1.10.5: .......... done
===> vcflib-1.0.0.r1.130 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of vcflib-1.0.0.r1.130
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
=> ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/ekg/vcflib/tar.gz/v1.0.0-rc1-130-g7e3d806?dummy=/ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz
fetch: https://codeload.github.com/ekg/vcflib/tar.gz/v1.0.0-rc1-130-g7e3d806?dummy=/ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/ekg/vcflib/tar.gz/v1.0.0-rc1-130-g7e3d806?dummy=/ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz: size of remote file is not known
ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz 0 B 0 Bps
===> Fetching all distfiles required by vcflib-1.0.0.r1.130 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.0.r1.130 for building
=> SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.0.r1.130 for building
===> Extracting for vcflib-1.0.0.r1.130
=> SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for vcflib-1.0.0.r1.130
===> Applying FreeBSD patches for vcflib-1.0.0.r1.130
===========================================================================
=======================<phase: build-depends >============================
===> vcflib-1.0.0.r1.130 depends on executable: fastahack - not found
===> Installing existing package /packages/All/fastahack-g20160702.txz
[111arm64-default-job-03] Installing fastahack-g20160702...
[111arm64-default-job-03] Extracting fastahack-g20160702: .......... done
===> vcflib-1.0.0.r1.130 depends on executable: fastahack - found
===> Returning to build of vcflib-1.0.0.r1.130
===> vcflib-1.0.0.r1.130 depends on executable: filevercmp - not found
===> Installing existing package /packages/All/filevercmp-g20151117.txz
[111arm64-default-job-03] Installing filevercmp-g20151117...
[111arm64-default-job-03] Extracting filevercmp-g20151117: ...... done
===> vcflib-1.0.0.r1.130 depends on executable: filevercmp - found
===> Returning to build of vcflib-1.0.0.r1.130
===> vcflib-1.0.0.r1.130 depends on executable: fsom - not found
===> Installing existing package /packages/All/fsom-g20151117.txz
[111arm64-default-job-03] Installing fsom-g20151117...
[111arm64-default-job-03] Extracting fsom-g20151117: ........ done
===> vcflib-1.0.0.r1.130 depends on executable: fsom - found
===> Returning to build of vcflib-1.0.0.r1.130
<snip>
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
***************************************************************************
===> vcflib-1.0.0.r1.130 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so)
===> Returning to build of vcflib-1.0.0.r1.130
===> vcflib-1.0.0.r1.130 depends on shared library: libtabix.so - not found
===> Installing existing package /packages/All/tabixpp-1.0.0.10.txz
[111arm64-default-job-03] Installing tabixpp-1.0.0.10...
[111arm64-default-job-03] Extracting tabixpp-1.0.0.10: ........ done
===> vcflib-1.0.0.r1.130 depends on shared library: libtabix.so - found (/usr/local/lib/libtabix.so)
===> Returning to build of vcflib-1.0.0.r1.130
===> vcflib-1.0.0.r1.130 depends on shared library: libsw.so - not found
===> Installing existing package /packages/All/smithwaterman-g20160702.txz
[111arm64-default-job-03] Installing smithwaterman-g20160702...
[111arm64-default-job-03] Extracting smithwaterman-g20160702: .......... done
===> vcflib-1.0.0.r1.130 depends on shared library: libsw.so - found (/usr/local/lib/libsw.so)
===> Returning to build of vcflib-1.0.0.r1.130
===========================================================================
=======================<phase: configure >============================
===> Configuring for vcflib-1.0.0.r1.130
===========================================================================
=======================<phase: build >============================
===> Building for vcflib-1.0.0.r1.130
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806'
c++ -c -o src/Variant.o src/Variant.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
src/Variant.cpp:174:1: warning: control may reach end of non-void function [-Wreturn-type]
};
^
src/Variant.cpp:502:5: warning: control may reach end of non-void function [-Wreturn-type]
}
^
src/Variant.cpp:627:5: warning: control may reach end of non-void function [-Wreturn-type]
}
^
src/Variant.cpp:661:5: warning: control may reach end of non-void function [-Wreturn-type]
}
^
src/Variant.cpp:699:5: warning: control may reach end of non-void function [-Wreturn-type]
}
^
5 warnings generated.
c++ -c -o src/rnglib.o src/rnglib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -c -o src/var.o src/var.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -c -o src/pdflib.o src/pdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -c -o src/cdflib.o src/cdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
src/cdflib.cpp:2223:36: warning: '&&' within '||' [-Wlogical-op-parentheses]
if(!(*s < 0.0e0 || *which != 3 && *s > *xn)) goto S160;
~~ ~~~~~~~~~~~~^~~~~~~~~~~
src/cdflib.cpp:2223:36: note: place parentheses around the '&&' expression to silence this warning
if(!(*s < 0.0e0 || *which != 3 && *s > *xn)) goto S160;
^
( )
src/cdflib.cpp:3909:20: warning: '&&' within '||' [-Wlogical-op-parentheses]
if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280;
~~~~~~^~~~~~~~~~~~~~ ~~
src/cdflib.cpp:3909:20: note: place parentheses around the '&&' expression to silence this warning
if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280;
^
( )
src/cdflib.cpp:3909:45: warning: '&&' within '||' [-Wlogical-op-parentheses]
if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280;
~~ ~~~~~~~^~~~~~~~~~~~~~~
src/cdflib.cpp:3909:45: note: place parentheses around the '&&' expression to silence this warning
if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280;
^
( )
src/cdflib.cpp:6924:17: warning: '&&' within '||' [-Wlogical-op-parentheses]
qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0;
~~~~~~^~~~~~~~~~~~~ ~~
src/cdflib.cpp:6924:17: note: place parentheses around the '&&' expression to silence this warning
qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0;
^
( )
src/cdflib.cpp:6924:41: warning: '&&' within '||' [-Wlogical-op-parentheses]
qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0;
~~ ~~~~~~~^~~~~~~~~~~~~
src/cdflib.cpp:6924:41: note: place parentheses around the '&&' expression to silence this warning
qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0;
^
( )
src/cdflib.cpp:6946:18: warning: '&&' within '||' [-Wlogical-op-parentheses]
qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0;
~~~~~~^~~~~~~~~~~~~~ ~~
src/cdflib.cpp:6946:18: note: place parentheses around the '&&' expression to silence this warning
qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0;
^
( )
src/cdflib.cpp:6946:43: warning: '&&' within '||' [-Wlogical-op-parentheses]
qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0;
~~ ~~~~~~~^~~~~~~~~~~~~~
src/cdflib.cpp:6946:43: note: place parentheses around the '&&' expression to silence this warning
qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0;
^
( )
src/cdflib.cpp:6985:18: warning: '&&' within '||' [-Wlogical-op-parentheses]
qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0;
~~~~~~^~~~~~~~~~~~~~ ~~
src/cdflib.cpp:6985:18: note: place parentheses around the '&&' expression to silence this warning
qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0;
^
( )
src/cdflib.cpp:6985:43: warning: '&&' within '||' [-Wlogical-op-parentheses]
qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0;
~~ ~~~~~~~^~~~~~~~~~~~~~
src/cdflib.cpp:6985:43: note: place parentheses around the '&&' expression to silence this warning
qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0;
^
( )
src/cdflib.cpp:7190:26: warning: '&&' within '||' [-Wlogical-op-parentheses]
qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0;
~~~~~~~~~~~~^~~~~~~~~~~~~~ ~~
src/cdflib.cpp:7190:26: note: place parentheses around the '&&' expression to silence this warning
qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0;
^
( )
src/cdflib.cpp:7190:55: warning: '&&' within '||' [-Wlogical-op-parentheses]
qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0;
~~ ~~~~~~~~~~~^~~~~~~~~~~~~~
src/cdflib.cpp:7190:55: note: place parentheses around the '&&' expression to silence this warning
qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0;
^
( )
11 warnings generated.
c++ -c -o src/split.o src/split.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 -c -o src/ssw.o src/ssw.cpp
In file included from src/ssw.cpp:38:
In file included from /usr/bin/../lib/clang/4.0.0/include/emmintrin.h:27:
In file included from /usr/bin/../lib/clang/4.0.0/include/xmmintrin.h:27:
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:47:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
__builtin_ia32_emms();
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:47:5: note: '__builtin_isless' declared here
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:47:25: error: too few arguments to function call, expected 2, have 0
__builtin_ia32_emms();
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:64:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:81:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:143:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:173:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:203:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:230:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:253:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:274:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:301:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:324:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:345:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:366:19: error: use of undeclared identifier '__builtin_ia32_paddb'
return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:387:19: error: use of undeclared identifier '__builtin_ia32_paddw'
return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:408:19: error: use of undeclared identifier '__builtin_ia32_paddd'
return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:430:19: error: use of undeclared identifier '__builtin_ia32_paddsb'
return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:453:19: error: use of undeclared identifier '__builtin_ia32_paddsw'
return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2);
^
/usr/bin/../lib/clang/4.0.0/include/mmintrin.h:475:19: error: use of undeclared identifier '__builtin_ia32_paddusb'
return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2);
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
gmake[1]: *** [<builtin>: src/ssw.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/vcflib
More information about the freebsd-pkg-fallout
mailing list