[package - head-amd64-default][science/R-cran-kernlab] Failed for R-cran-kernlab-0.9.25 in build-depends
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Oct 17 15:44:20 UTC 2017
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: tota at FreeBSD.org
Last committer: tota at FreeBSD.org
Ident: $FreeBSD: head/science/R-cran-kernlab/Makefile 449516 2017-09-10 07:06:04Z tota $
Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p452255_s324676/logs/R-cran-kernlab-0.9.25.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p452255_s324676
Log:
====>> Building science/R-cran-kernlab
build started at Tue Oct 17 15:27:47 UTC 2017
port directory: /usr/ports/science/R-cran-kernlab
building for: FreeBSD head-amd64-default-job-22 12.0-CURRENT FreeBSD 12.0-CURRENT 1200051 amd64
maintained by: tota at FreeBSD.org
Makefile ident: $FreeBSD: head/science/R-cran-kernlab/Makefile 449516 2017-09-10 07:06:04Z tota $
Poudriere version: 3.1.21
Host OSVERSION: 1200042
Jail OSVERSION: 1200051
Job Id: 22
!!! Jail is newer than host. (Jail: 1200051, Host: 1200042) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200051
UNAME_v=FreeBSD 12.0-CURRENT 1200051
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=R-cran-kernlab-0.9.25
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.21
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/R-cran-kernlab/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/R-cran-kernlab/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -
fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
R_MOD_DIR=lib/R/library/kernlab
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/kernlab"
EXAMPLESDIR="share/examples/kernlab"
DATADIR="share/kernlab"
WWWDIR="www/kernlab"
ETCDIR="etc/kernlab"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/kernlab
DOCSDIR=/usr/local/share/doc/kernlab
EXAMPLESDIR=/usr/local/share/examples/kernlab
WWWDIR=/usr/local/www/kernlab
ETCDIR=/usr/local/etc/kernlab
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=amd64
CONFIGURE_MAX_CMD_LEN=262144
HAVE_COMPAT_IA32_KERN=YES
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200051
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun
_JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.9|1.6\+|1.7\+|1.8\+|1.9\+
_OSRELEASE=12.0-CURRENT
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> R-cran-kernlab-0.9.25 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.1.txz
[head-amd64-default-job-22] Installing pkg-1.10.1...
[head-amd64-default-job-22] Extracting pkg-1.10.1: .......... done
===> R-cran-kernlab-0.9.25 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-kernlab-0.9.25
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-kernlab-0.9.25 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-kernlab-0.9.25 for building
=> SHA256 Checksum OK for kernlab_0.9-25.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-kernlab-0.9.25 for building
===> Extracting for R-cran-kernlab-0.9.25
=> SHA256 Checksum OK for kernlab_0.9-25.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for R-cran-kernlab-0.9.25
===========================================================================
=======================<phase: build-depends >============================
===> R-cran-kernlab-0.9.25 depends on file: /usr/local/bin/R - not found
===> Installing existing package /packages/All/R-3.4.2.txz
[head-amd64-default-job-22] Installing R-3.4.2...
[head-amd64-default-job-22] `-- Installing cairo-1.14.8_1,2...
[head-amd64-default-job-22] | `-- Installing dri2proto-2.8...
[head-amd64-default-job-22] | `-- Extracting dri2proto-2.8: .... done
[head-amd64-default-job-22] | `-- Installing fontconfig-2.12.1,1...
[head-amd64-default-job-22] | | `-- Installing expat-2.2.1...
[head-amd64-default-job-22] | | `-- Extracting expat-2.2.1: .......... done
[head-amd64-default-job-22] | | `-- Installing freetype2-2.8...
[head-amd64-default-job-22] | | `-- Extracting freetype2-2.8: .......... done
[head-amd64-default-job-22] | `-- Extracting fontconfig-2.12.1,1: .......... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
fc-cache: succeeded
[head-amd64-default-job-22] | `-- Installing gettext-runtime-0.19.8.1_1...
[head-amd64-default-job-22] | | `-- Installing indexinfo-0.2.6...
[head-amd64-default-job-22] | | `-- Extracting indexinfo-0.2.6: .... done
[head-amd64-default-job-22] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[head-amd64-default-job-22] | `-- Installing glib-2.50.2_6,1...
[head-amd64-default-job-22] | | `-- Installing libffi-3.2.1_1...
[head-amd64-default-job-22] | | `-- Extracting libffi-3.2.1_1: .......... done
[head-amd64-default-job-22] | | `-- Installing libiconv-1.14_11...
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[head-amd64-default-job-22] | | `-- Installing pcre-8.40_1...
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[head-amd64-default-job-22] | | `-- Installing perl5-5.24.3...
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[head-amd64-default-job-22] | | `-- Installing python27-2.7.14_1...
[head-amd64-default-job-22] | | `-- Installing readline-7.0.3...
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[head-amd64-default-job-22] | | `-- Extracting python27-2.7.14_1: .......... done
[head-amd64-default-job-22] | `-- Extracting glib-2.50.2_6,1: .......... done
No schema files found: doing nothing.
[head-amd64-default-job-22] | `-- Installing glproto-1.4.17...
[head-amd64-default-job-22] | `-- Extracting glproto-1.4.17: ...... done
[head-amd64-default-job-22] | `-- Installing libX11-1.6.5,1...
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[head-amd64-default-job-22] | | `-- Installing libXau-1.0.8_3...
[head-amd64-default-job-22] | | `-- Installing xproto-7.0.31...
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[head-amd64-default-job-22] | | `-- Extracting libXau-1.0.8_3: .......... done
[head-amd64-default-job-22] | | `-- Installing libXdmcp-1.1.2...
[head-amd64-default-job-22] | | `-- Extracting libXdmcp-1.1.2: ......... done
[head-amd64-default-job-22] | | `-- Installing libxcb-1.12_2...
[head-amd64-default-job-22] | | `-- Installing libpthread-stubs-0.4...
[head-amd64-default-job-22] | | `-- Extracting libpthread-stubs-0.4: . done
[head-amd64-default-job-22] | | `-- Installing libxml2-2.9.4...
[head-amd64-default-job-22] | | `-- Extracting libxml2-2.9.4: .......... done
[head-amd64-default-job-22] | | `-- Extracting libxcb-1.12_2: .......... done
[head-amd64-default-job-22] | `-- Extracting libX11-1.6.5,1: .......... done
[head-amd64-default-job-22] | `-- Installing libXext-1.3.3_1,1...
[head-amd64-default-job-22] | | `-- Installing xextproto-7.3.0...
[head-amd64-default-job-22] | | `-- Extracting xextproto-7.3.0: .......... done
[head-amd64-default-job-22] | `-- Extracting libXext-1.3.3_1,1: .......... done
[head-amd64-default-job-22] | `-- Installing libXrender-0.9.10...
[head-amd64-default-job-22] | | `-- Installing renderproto-0.11.1...
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[head-amd64-default-job-22] | `-- Extracting libXrender-0.9.10: .......... done
[head-amd64-default-job-22] | `-- Installing mesa-libs-17.2.2...
[head-amd64-default-job-22] | | `-- Installing libXdamage-1.1.4_3...
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[head-amd64-default-job-22] | | `-- Installing libXfixes-5.0.3...
[head-amd64-default-job-22] | | | `-- Installing fixesproto-5.0...
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[head-amd64-default-job-22] | | `-- Extracting libXfixes-5.0.3: .......... done
[head-amd64-default-job-22] | | `-- Extracting libXdamage-1.1.4_3: ...... done
[head-amd64-default-job-22] | | `-- Installing libXxf86vm-1.1.4_1...
[head-amd64-default-job-22] | | `-- Installing xf86vidmodeproto-2.3.1...
[head-amd64-default-job-22] | | `-- Extracting xf86vidmodeproto-2.3.1: .... done
[head-amd64-default-job-22] | | `-- Extracting libXxf86vm-1.1.4_1: .......... done
[head-amd64-default-job-22] | | `-- Installing libdrm-2.4.83,1...
[head-amd64-default-job-22] | | `-- Installing libpciaccess-0.13.5...
[head-amd64-default-job-22] | | | `-- Installing pciids-20171011...
[head-amd64-default-job-22] | | | `-- Extracting pciids-20171011: ..... done
[head-amd64-default-job-22] | | `-- Extracting libpciaccess-0.13.5: ...... done
[head-amd64-default-job-22] | | `-- Extracting libdrm-2.4.83,1: .......... done
[head-amd64-default-job-22] | | `-- Installing libunwind-20170113_1...
[head-amd64-default-job-22] | | `-- Extracting libunwind-20170113_1: .......... done
[head-amd64-default-job-22] | | `-- Installing libxshmfence-1.2_2...
[head-amd64-default-job-22] | | `-- Extracting libxshmfence-1.2_2: ......... done
[head-amd64-default-job-22] | `-- Extracting mesa-libs-17.2.2: .......... done
[head-amd64-default-job-22] | `-- Installing pixman-0.34.0...
[head-amd64-default-job-22] | `-- Extracting pixman-0.34.0: .......... done
[head-amd64-default-job-22] | `-- Installing png-1.6.34...
[head-amd64-default-job-22] | `-- Extracting png-1.6.34: .......... done
[head-amd64-default-job-22] | `-- Installing xcb-util-renderutil-0.3.9_1...
[head-amd64-default-job-22] | | `-- Installing xcb-util-0.4.0_2,1...
[head-amd64-default-job-22] | | `-- Extracting xcb-util-0.4.0_2,1: .......... done
[head-amd64-default-job-22] | `-- Extracting xcb-util-renderutil-0.3.9_1: ...... done
[head-amd64-default-job-22] `-- Extracting cairo-1.14.8_1,2: .......... done
[head-amd64-default-job-22] `-- Installing curl-7.56.0...
[head-amd64-default-job-22] | `-- Installing ca_root_nss-3.32.1...
[head-amd64-default-job-22] | `-- Extracting ca_root_nss-3.32.1: ........ done
[head-amd64-default-job-22] | `-- Installing libnghttp2-1.26.0...
[head-amd64-default-job-22] | `-- Extracting libnghttp2-1.26.0: .......... done
[head-amd64-default-job-22] `-- Extracting curl-7.56.0: .......... done
[head-amd64-default-job-22] `-- Installing flang-4.0.20170812_1...
[head-amd64-default-job-22] | `-- Installing flang-clang-4.0.20170812_1...
[head-amd64-default-job-22] | | `-- Installing libedit-3.1.20170329_2,1...
[head-amd64-default-job-22] | | `-- Extracting libedit-3.1.20170329_2,1: .......... done
[head-amd64-default-job-22] | | `-- Installing llvm40-4.0.1_3...
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[head-amd64-default-job-22] | | `-- Installing openmp-5.0.0...
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[head-amd64-default-job-22] | `-- Extracting flang-clang-4.0.20170812_1: .......... done
Child process pid=62850 terminated abnormally: Killed
*** Error code 137
Stop.
make: stopped in /usr/ports/science/R-cran-kernlab
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