[package - 110armv6-quarterly][biology/seqan-apps] Failed for seqan-apps-2.2.0 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Dec 22 06:07:49 UTC 2016
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: h2+fbsdports at fsfe.org
Last committer: pawel at FreeBSD.org
Ident: $FreeBSD: branches/2016Q4/biology/seqan-apps/Makefile 422156 2016-09-14 19:38:58Z pawel $
Log URL: http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/429040/logs/seqan-apps-2.2.0.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=429040
Log:
====>> Building biology/seqan-apps
build started at Thu Dec 22 06:01:15 UTC 2016
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD 110armv6-quarterly-job-25 11.0-RELEASE-p5 FreeBSD 11.0-RELEASE-p5 r309692 arm
maintained by: h2+fbsdports at fsfe.org
Makefile ident: $FreeBSD: branches/2016Q4/biology/seqan-apps/Makefile 422156 2016-09-14 19:38:58Z pawel $
Poudriere version: 3.1.14
Host OSVERSION: 1200017
Jail OSVERSION: 1100122
Job Id: 25
---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 11.0-RELEASE-p5 r309692
UNAME_r=11.0-RELEASE-p5
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=armv6
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref
QEMU_EMULATING=1
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p5
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=28
PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool
MASTERNAME=110armv6-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---
---Begin OPTIONS List---
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc49" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc49 -fno-strict-aliasing" CPP="cpp49" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc49 -L/usr/local/lib/gcc49" LIBS="" CXX="g++49" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc49 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc4
9" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--
---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
=======================<phase: check-sanity >============================
===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> seqan-apps-2.2.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.8.8.txz
pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended
[110armv6-quarterly-job-25] Installing pkg-1.8.8...
[110armv6-quarterly-job-25] Extracting pkg-1.8.8: .......... done
===> seqan-apps-2.2.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of seqan-apps-2.2.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.2.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.2.0 for building
=> SHA256 Checksum OK for seqan-seqan-seqan-v2.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.2.0 for building
===> Extracting for seqan-apps-2.2.0
=> SHA256 Checksum OK for seqan-seqan-seqan-v2.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for seqan-apps-2.2.0
===========================================================================
=======================<phase: build-depends >============================
===> seqan-apps-2.2.0 depends on package: boost-libs>0 - not found
===> Installing existing package /packages/All/boost-libs-1.55.0_13.txz
pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended
[110armv6-quarterly-job-25] Installing boost-libs-1.55.0_13...
[110armv6-quarterly-job-25] `-- Installing icu-57.1,1...
[110armv6-quarterly-job-25] `-- Extracting icu-57.1,1: .......... done
[110armv6-quarterly-job-25] Extracting boost-libs-1.55.0_13: .......... done
Message from boost-libs-1.55.0_13:
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> seqan-apps-2.2.0 depends on package: boost-libs>0 - found
===> Returning to build of seqan-apps-2.2.0
===> seqan-apps-2.2.0 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.6.2.txz
pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended
[110armv6-quarterly-job-25] Installing cmake-3.6.2...
[110armv6-quarterly-job-25] `-- Installing expat-2.2.0...
[110armv6-quarterly-job-25] `-- Extracting expat-2.2.0: .......... done
[110armv6-quarterly-job-25] `-- Installing cmake-modules-3.6.2...
[110armv6-quarterly-job-25] `-- Extracting cmake-modules-3.6.2: .......... done
[110armv6-quarterly-job-25] `-- Installing curl-7.51.0_1...
[110armv6-quarterly-job-25] | `-- Installing ca_root_nss-3.27.1...
[110armv6-quarterly-job-25] | `-- Extracting ca_root_nss-3.27.1: ....... done
[110armv6-quarterly-job-25] `-- Extracting curl-7.51.0_1: .......... done
[110armv6-quarterly-job-25] `-- Installing libarchive-3.2.1,1...
[110armv6-quarterly-job-25] | `-- Installing liblz4-131...
[110armv6-quarterly-job-25] | `-- Extracting liblz4-131: .......... done
[110armv6-quarterly-job-25] | `-- Installing lzo2-2.09...
<snip>
system administrator.
*********************************** NOTE **********************************
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
***************************************************************************
===> seqan-apps-2.2.0 depends on file: /usr/local/bin/cmake - found
===> Returning to build of seqan-apps-2.2.0
===> seqan-apps-2.2.0 depends on executable: gcc49 - not found
===> Installing existing package /packages/All/gcc49-4.9.4.txz
pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended
[110armv6-quarterly-job-25] Installing gcc49-4.9.4...
[110armv6-quarterly-job-25] `-- Installing indexinfo-0.2.5...
[110armv6-quarterly-job-25] `-- Extracting indexinfo-0.2.5: .... done
[110armv6-quarterly-job-25] `-- Installing mpc-1.0.3...
[110armv6-quarterly-job-25] | `-- Installing gmp-5.1.3_3...
[110armv6-quarterly-job-25] | `-- Extracting gmp-5.1.3_3: .......... done
[110armv6-quarterly-job-25] | `-- Installing mpfr-3.1.5...
[110armv6-quarterly-job-25] | `-- Extracting mpfr-3.1.5: .......... done
[110armv6-quarterly-job-25] `-- Extracting mpc-1.0.3: ...... done
[110armv6-quarterly-job-25] `-- Installing binutils-2.27_5,1...
[110armv6-quarterly-job-25] | `-- Installing gettext-runtime-0.19.8.1...
[110armv6-quarterly-job-25] | `-- Extracting gettext-runtime-0.19.8.1: .......... done
[110armv6-quarterly-job-25] `-- Extracting binutils-2.27_5,1: .......... done
[110armv6-quarterly-job-25] Extracting gcc49-4.9.4: .......... done
Message from gcc49-4.9.4:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc49
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> seqan-apps-2.2.0 depends on executable: gcc49 - found
===> Returning to build of seqan-apps-2.2.0
===> seqan-apps-2.2.0 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for seqan-apps-2.2.0
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/seqan-apps/work/.build
-- The CXX compiler identification is GNU 4.9.4
-- Check for working CXX compiler: /usr/local/bin/g++49
-- Check for working CXX compiler: /usr/local/bin/g++49 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Initializing SeqAn Build System...
-- Selected repository dir: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0
-- No revision system found.
-- Repository date not determined.
-- Repository revision not determined.
-- Configuring apps
-- Configuring apps/alf
-- Performing Test CXX14_BUILTIN
-- Performing Test CXX14_BUILTIN - Failed
-- Performing Test CXX14_FLAG
-- Performing Test CXX14_FLAG - Success
-- Looking for C++ include execinfo.h
-- Looking for C++ include execinfo.h - found
-- Configuring apps/bs_tools
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.8")
-- Boost version: 1.55.0
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/dfi
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/fiona
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Boost version: 1.55.0
-- Not building fiona on 32bit architectures.
-- Configuring apps/fx_tools
-- Configuring apps/gustaf
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/insegt
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/mason2
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/micro_razers
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/ngs_roi
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/pair_align
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/param_chooser
-- Configuring apps/rabema
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/razers
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/razers3
-- Found BZip2: /usr/lib/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/rep_sep
-- Configuring apps/sak
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/sam2matrix
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/samcat
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/searchjoin
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/seqan_tcoffee
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/seqcons2
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/sgip
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/snp_store
-- Boost version: 1.55.0
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/splazers
-- Not building splazers on 32bit architectures.
-- Configuring apps/stellar
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/tree_recon
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Configuring apps/yara
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Unsupported platform FreeBSD, disabling CTD support.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_C_COMPILER
CMAKE_C_FLAGS
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/biology/seqan-apps/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for seqan-apps-2.2.0
/usr/local/bin/cmake -H/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 -B/wrkdirs/usr/ports/biology/seqan-apps/work/.build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/seqan-apps/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/seqan-apps/work/.build/CMakeFiles/progress.marks
/nxb-bin/usr/bin/make -f CMakeFiles/Makefile2 all
/nxb-bin/usr/bin/make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/CMakeFiles/seqan_library.dir/DependInfo.cmake
Scanning dependencies of target seqan_library
/nxb-bin/usr/bin/make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build
[ 0%] Built target seqan_library
/nxb-bin/usr/bin/make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/alf /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/alf /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake
Scanning dependencies of target alf
/nxb-bin/usr/bin/make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build
[ 0%] Building CXX object apps/alf/CMakeFiles/alf.dir/alf.cpp.o
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/alf && /usr/local/bin/g++49 -DSEQAN_APP_VERSION=\"1.1.6\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc49 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc49 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc49 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc49 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/alf.dir/alf.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/alf/alf.cpp
In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0,
from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74,
from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/alf/alf.cpp:44:
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension
#warning "No supported platform for SIMD vectorization!"
^
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp]
[ 1%] Linking CXX executable ../../bin/alf
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/alf && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1
/usr/local/bin/g++49 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc49 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc49 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc49 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc49 -Wl,-rpath=/usr/local/lib/gcc49 -L/usr/local/lib/gcc49 CMakeFiles/alf.dir/alf.cpp.o -o ../../bin/alf -lpthread -lexecinfo -lelf
//usr/lib/libexecinfo.so: undefined reference to `_Unwind_GetIP at GCC_3.0'
//usr/lib/libexecinfo.so: undefined reference to `_Unwind_Backtrace at GCC_3.3'
collect2: error: ld returned 1 exit status
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/seqan-apps/work/.build
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/seqan-apps/work/.build
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/seqan-apps/work/.build
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/seqan-apps
More information about the freebsd-pkg-fallout
mailing list