[package - 101i386-default][math/libRmath] Failed for libRmath-3.3.0 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sat May 28 01:53:16 UTC 2016
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: bf at FreeBSD.org
Last committer: swills at FreeBSD.org
Ident: $FreeBSD: head/math/libRmath/Makefile 413746 2016-04-21 16:43:14Z swills $
Log URL: http://beefy5.nyi.freebsd.org/data/101i386-default/415968/logs/libRmath-3.3.0.log
Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=101i386-default&build=415968
Log:
====>> Building math/libRmath
build started at Sat May 28 01:52:38 UTC 2016
port directory: /usr/ports/math/libRmath
building for: FreeBSD 101i386-default-job-03 10.1-RELEASE-p34 FreeBSD 10.1-RELEASE-p34 i386
maintained by: bf at FreeBSD.org
Makefile ident: $FreeBSD: head/math/libRmath/Makefile 413746 2016-04-21 16:43:14Z swills $
Poudriere version: 3.1.12
Host OSVERSION: 1100109
Jail OSVERSION: 1001000
---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
UNAME_v=FreeBSD 10.1-RELEASE-p34
UNAME_r=10.1-RELEASE-p34
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=i386
LINUX_OSRELEASE=2.6.32
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/101i386-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=libRmath-3.3.0
OSREL=10.1
_OSRELEASE=10.1-RELEASE-p34
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/101i386-default/ref/.p/pool
MASTERNAME=101i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1001000
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for libRmath-3.3.0:
DOCS=on: Build and/or install documentation
MISSING=off: use libmissing rather than libquadmath
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--disable-nls --with-ICU=no --with-cairo=no --with-jpeglib=no --with-libpng=no --with-libtiff=no --with-readline=no --with-tcltk=no --with-x=no --without-libintl-prefix --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
LIBR_LDFLAGS=" -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" OBJC="gcc48" SED="/usr/local/bin/gsed" ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes ac_cv_header_iconv_h=no SHLIB_LDFLAGS="-fpic" SHLIB_CXXLDFLAGS="-fpic" F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY=
"/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc48" CFLAGS="-O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -
fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing" CPP="cpp48" CPPFLAGS="" LDFLAGS=" -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" LIBS="" CXX="g++48" CXXFLAGS="-O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc48" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
RMATH_SOVERSION="0"
OSREL=10.1
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/libRmath"
EXAMPLESDIR="share/examples/libRmath"
DATADIR="share/libRmath"
WWWDIR="www/libRmath"
ETCDIR="etc/libRmath"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/libRmath
DOCSDIR=/usr/local/share/doc/libRmath
EXAMPLESDIR=/usr/local/share/examples/libRmath
WWWDIR=/usr/local/www/libRmath
ETCDIR=/usr/local/etc/libRmath
--End SUB_LIST--
---Begin make.conf---
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> libRmath-3.3.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.8.3.txz
[101i386-default-job-03] Installing pkg-1.8.3...
[101i386-default-job-03] Extracting pkg-1.8.3: .......... done
===> libRmath-3.3.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of libRmath-3.3.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-3.3.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-3.3.0 for building
=> SHA256 Checksum OK for R-3.3.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-3.3.0 for building
===> Extracting for libRmath-3.3.0
=> SHA256 Checksum OK for R-3.3.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for libRmath-3.3.0
===> Applying FreeBSD patches for libRmath-3.3.0
===========================================================================
=======================<phase: build-depends >============================
===> libRmath-3.3.0 depends on file: /usr/local/bin/gsed - not found
===> Installing existing package /packages/All/gsed-4.2.2.txz
[101i386-default-job-03] Installing gsed-4.2.2...
[101i386-default-job-03] `-- Installing indexinfo-0.2.4...
[101i386-default-job-03] `-- Extracting indexinfo-0.2.4: .... done
[101i386-default-job-03] `-- Installing gettext-runtime-0.19.7...
[101i386-default-job-03] `-- Extracting gettext-runtime-0.19.7: .......... done
[101i386-default-job-03] Extracting gsed-4.2.2: .......... done
===> libRmath-3.3.0 depends on file: /usr/local/bin/gsed - found
===> Returning to build of libRmath-3.3.0
===> libRmath-3.3.0 depends on executable: texi2dvi - not found
===> Installing existing package /packages/All/texinfo-6.1.20160425.txz
[101i386-default-job-03] Installing texinfo-6.1.20160425...
[101i386-default-job-03] `-- Installing perl5-5.20.3_13...
[101i386-default-job-03] `-- Extracting perl5-5.20.3_13: .......... done
[101i386-default-job-03] Extracting texinfo-6.1.20160425: .......... done
Message from perl5-5.20.3_13:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===> libRmath-3.3.0 depends on executable: texi2dvi - found
===> Returning to build of libRmath-3.3.0
===> libRmath-3.3.0 depends on executable: gfortran48 - not found
===> Installing existing package /packages/All/gcc-4.8.5_2.txz
[101i386-default-job-03] Installing gcc-4.8.5_2...
[101i386-default-job-03] `-- Installing mpc-1.0.3...
[101i386-default-job-03] | `-- Installing gmp-5.1.3_3...
[101i386-default-job-03] | `-- Extracting gmp-5.1.3_3: .......... done
[101i386-default-job-03] | `-- Installing mpfr-3.1.4...
[101i386-default-job-03] | `-- Extracting mpfr-3.1.4: .......... done
[101i386-default-job-03] `-- Extracting mpc-1.0.3: ...... done
[101i386-default-job-03] `-- Installing binutils-2.25.1_2,1...
[101i386-default-job-03] `-- Extracting binutils-2.25.1_2,1: .......... done
[101i386-default-job-03] `-- Installing gcc-ecj-4.5...
[101i386-default-job-03] `-- Extracting gcc-ecj-4.5: . done
[101i386-default-job-03] Extracting gcc-4.8.5_2: .......... done
Message from gcc-4.8.5_2:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc48
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> libRmath-3.3.0 depends on executable: gfortran48 - found
===> Returning to build of libRmath-3.3.0
<snip>
checking whether gfortran48 appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran48 and gcc48 -std=gnu99 agree on int and double... yes
checking whether gfortran48 and gcc48 -std=gnu99 agree on double complex... yes
checking for gfortran48 option to support OpenMP... -fopenmp
checking whether g++48 accepts -M for generating dependencies... yes
checking for g++48 option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... yes, using gcc48 -MM
checking for ObjC runtime library... -lobjc
checking for ObjC runtime style... unknown
checking whether gcc48 accepts -fobjc-exceptions... yes
checking whether C runtime needs -D__NO_MATH_INLINES... no
checking for xmkmf... no
checking whether g++48 supports C++11 features by default... no
checking whether g++48 supports C++11 features with -std=c++11... yes
checking for off_t... (cached) yes
checking for working alloca.h... no
checking for alloca... yes
checking whether alloca is declared... no
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... (cached) yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... (cached) yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... (cached) yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... no
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... no
checking whether fcntl exists and is declared... (cached) yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... (cached) yes
checking whether sigaltstack exists and is declared... (cached) yes
checking whether sigemptyset exists and is declared... (cached) yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... (cached) yes
checking whether getline exists and is declared... (cached) yes
checking whether setenv exists and is declared... (cached) yes
checking whether unsetenv exists and is declared... (cached) yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... (cached) yes
checking whether stat exists and is declared... (cached) yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... (cached) yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... (cached) yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... (cached) yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... (cached) yes
checking whether getcwd exists and is declared... (cached) yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... (cached) yes
checking whether readlink exists and is declared... (cached) yes
checking whether symlink exists and is declared... (cached) yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... no
checking whether sched_getaffinity exists and is declared... no
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... no
checking for putenv... (cached) yes
checking whether putenv is declared... yes
checking for vasprintf... (cached) yes
checking whether vasprintf is declared... yes
checking for mempcpy... no
checking for realpath... (cached) yes
checking whether realpath is declared... (cached) yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... no
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... (cached) yes
checking for strdup... (cached) yes
checking for strncasecmp... (cached) yes
checking whether mkdtemp is declared... (cached) yes
checking whether strdup is declared... (cached) yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... yes
checking whether mktime works correctly outside 1902-2037... no
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... no
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... no
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for iconv.h... (cached) no
checking for iconv... no
checking for iconvlist... yes
checking for iconv... yes
checking for iconv declaration...
extern size_t iconv (iconv_t cd, const char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... (cached) yes
checking whether mbrtowc exists and is declared... (cached) yes
checking whether wcrtomb exists and is declared... (cached) yes
checking whether wcscoll exists and is declared... (cached) yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... (cached) yes
checking whether iswblank exists and is declared... (cached) yes
checking whether wctype exists and is declared... (cached) yes
checking whether iswctype exists and is declared... (cached) yes
checking for wctrans_t... yes
checking for mbstate_t... (cached) yes
checking for X... disabled
using X11 ... no
checking for BSD networking... yes
checking for rpc/types.h... (cached) yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... (cached) yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking mmap support for zlib... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... no
checking whether PCRE support suffices... configure: error: pcre >= 8.10 library and headers are required
===> Script "configure" failed unexpectedly.
Please report the problem to bf at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/math/libRmath/work/R-3.3.0/config.log" including the
output of the failure of your make command. Also, it might be a good idea to
provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/math/libRmath
More information about the freebsd-pkg-fallout
mailing list