[package - head-armv6-default][math/libR] Failed for libR-3.2.2 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Dec 10 17:21:49 UTC 2015
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: bf at FreeBSD.org
Last committer: bapt at FreeBSD.org
Ident: $FreeBSD: head/math/libR/Makefile 375097 2014-12-20 19:15:31Z bapt $
Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p403218_s291949/logs/libR-3.2.2.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p403218_s291949
Log:
====>> Building math/libR
build started at Thu Dec 10 17:16:46 UTC 2015
port directory: /usr/ports/math/libR
building for: FreeBSD head-armv6-default-job-08 11.0-CURRENT FreeBSD 11.0-CURRENT r291949 arm
maintained by: bf at FreeBSD.org
Makefile ident: $FreeBSD: head/math/libR/Makefile 375097 2014-12-20 19:15:31Z bapt $
Poudriere version: 3.1.10
Host OSVERSION: 1100085
Jail OSVERSION: 1100091
!!! Jail is newer than host. (Jail: 1100091, Host: 1100085) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100091
UNAME_v=FreeBSD 11.0-CURRENT r291949
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=libR-3.2.2
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.10
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for libR-3.2.2:
ATLAS=off: Use ATLAS instead of BLAS/LAPACK
DOCS=on: Build and/or install documentation
ICU=on: Use ICU for collation in multibyte locales
MISSING=off: use libmissing rather than libquadmath
PCRE_PORT=on: Use devel/pcre instead of the bundled PCRE
THREADS=on: Threading support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--enable-memory-profiling rdocdir=/usr/local/share/doc/libR --with-system-bzlib --with-system-zlib --with-blas="no" --with-lapack="no" --with-ICU --with-system-pcre --enable-threads=posix --disable-BLAS-shlib --without-pic --without-x --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
LIBR_LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" OBJC="gcc48" SED="/usr/local/bin/gsed" ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes FCFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" R_LD_LIBRARY_PATH="/usr/local/lib/gcc48:/usr/local/lib" TAR="/usr/bin/tar" SHLIB_LDFLAGS="-fpic" SHLIB_CXXLDFLAGS="-fpic" F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libR/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libR/work HOME=/wrkdirs/usr/ports/math/libR/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objd
ump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libR/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libR/work HOME=/wrkdirs/usr/ports/math/libR/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc48" CFLAGS="-O2 -pipe -mfloat-abi=softfp -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing" CPP="cpp48" CPPFLAGS="-I/usr/local/include -I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/g
cc48 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" LIBS="" CXX="g++48" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc48" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
R_SOVERSION="1"
RBLAS_SOVERSION="2"
RLAPACK_SOVERSION="4"
LAPACK=""
NLS=""
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/libR"
EXAMPLESDIR="share/examples/libR"
DATADIR="share/libR"
WWWDIR="www/libR"
ETCDIR="etc/libR"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/libR
DOCSDIR=/usr/local/share/doc/libR
EXAMPLESDIR=/usr/local/share/examples/libR
WWWDIR=/usr/local/www/libR
ETCDIR=/usr/local/etc/libR
--End SUB_LIST--
---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
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SIZE=/nxb-bin/usr/bin/size
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YACC=/nxb-bin/usr/bin/yacc
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MAKE=/nxb-bin/usr/bin/make
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FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
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CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
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YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
<snip>
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> libR-3.2.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.6.2.txz
[head-armv6-default-job-08] Installing pkg-1.6.2...
[head-armv6-default-job-08] Extracting pkg-1.6.2: .......... done
Message from pkg-1.6.2:
If you are upgrading from the old package format, first run:
# pkg2ng
===> libR-3.2.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of libR-3.2.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libR-3.2.2 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libR-3.2.2 for building
=> SHA256 Checksum OK for R-3.2.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libR-3.2.2 for building
===> Extracting for libR-3.2.2
=> SHA256 Checksum OK for R-3.2.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for libR-3.2.2
===> Applying FreeBSD patches for libR-3.2.2
===========================================================================
=======================<phase: build-depends >============================
===> libR-3.2.2 depends on file: /usr/local/bin/gsed - not found
===> Installing existing package /packages/All/gsed-4.2.2.txz
[head-armv6-default-job-08] Installing gsed-4.2.2...
[head-armv6-default-job-08] `-- Installing indexinfo-0.2.4...
[head-armv6-default-job-08] `-- Extracting indexinfo-0.2.4: .... done
[head-armv6-default-job-08] `-- Installing gettext-runtime-0.19.6...
[head-armv6-default-job-08] `-- Extracting gettext-runtime-0.19.6: .......... done
[head-armv6-default-job-08] Extracting gsed-4.2.2: .......... done
===> libR-3.2.2 depends on file: /usr/local/bin/gsed - found
===> Returning to build of libR-3.2.2
===> libR-3.2.2 depends on executable: texi2dvi - not found
===> Installing existing package /packages/All/texinfo-6.0.20151108.txz
[head-armv6-default-job-08] Installing texinfo-6.0.20151108...
[head-armv6-default-job-08] `-- Installing perl5-5.20.3_8...
[head-armv6-default-job-08] `-- Extracting perl5-5.20.3_8: .......... done
[head-armv6-default-job-08] Extracting texinfo-6.0.20151108: .......... done
Message from perl5-5.20.3_8:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===> libR-3.2.2 depends on executable: texi2dvi - found
===> Returning to build of libR-3.2.2
===> libR-3.2.2 depends on executable: gfortran48 - not found
===> Installing existing package /packages/All/gcc-4.8.5_2.txz
[head-armv6-default-job-08] Installing gcc-4.8.5_2...
[head-armv6-default-job-08] `-- Installing mpc-1.0.3...
[head-armv6-default-job-08] | `-- Installing gmp-5.1.3_2...
[head-armv6-default-job-08] | `-- Extracting gmp-5.1.3_2: .......... done
[head-armv6-default-job-08] | `-- Installing mpfr-3.1.3...
[head-armv6-default-job-08] | `-- Extracting mpfr-3.1.3: .......... done
[head-armv6-default-job-08] `-- Extracting mpc-1.0.3: ...... done
[head-armv6-default-job-08] `-- Installing binutils-2.25.1...
[head-armv6-default-job-08] `-- Extracting binutils-2.25.1: .......... done
[head-armv6-default-job-08] Extracting gcc-4.8.5_2: .......... done
Message from gcc-4.8.5_2:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc48
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> libR-3.2.2 depends on executable: gfortran48 - found
===> Returning to build of libR-3.2.2
===> libR-3.2.2 depends on executable: msgfmt - not found
===> Installing existing package /packages/All/gettext-tools-0.19.6.txz
[head-armv6-default-job-08] Installing gettext-tools-0.19.6...
[head-armv6-default-job-08] `-- Installing expat-2.1.0_3...
[head-armv6-default-job-08] `-- Extracting expat-2.1.0_3: .......... done
[head-armv6-default-job-08] Extracting gettext-tools-0.19.6: .......... done
===> libR-3.2.2 depends on executable: msgfmt - found
===> Returning to build of libR-3.2.2
===> libR-3.2.2 depends on executable: gcc48 - found
===> libR-3.2.2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> libR-3.2.2 depends on shared library: libicui18n.so - not found
===> Installing existing package /packages/All/icu-55.1.txz
[head-armv6-default-job-08] Installing icu-55.1...
[head-armv6-default-job-08] Extracting icu-55.1: .......... done
===> libR-3.2.2 depends on shared library: libicui18n.so - found (/usr/local/lib/libicui18n.so)
===> Returning to build of libR-3.2.2
===> libR-3.2.2 depends on shared library: libpcre.so - not found
===> Installing existing package /packages/All/pcre-8.37_4.txz
[head-armv6-default-job-08] Installing pcre-8.37_4...
[head-armv6-default-job-08] Extracting pcre-8.37_4: .......... done
===> libR-3.2.2 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so)
===> Returning to build of libR-3.2.2
===> libR-3.2.2 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so)
===> libR-3.2.2 depends on shared library: libreadline.so.6 - not found
===> Installing existing package /packages/All/readline-6.3.8.txz
[head-armv6-default-job-08] Installing readline-6.3.8...
[head-armv6-default-job-08] Extracting readline-6.3.8: .......... done
===> libR-3.2.2 depends on shared library: libreadline.so.6 - found (/usr/local/lib/libreadline.so.6)
===> Returning to build of libR-3.2.2
===========================================================================
=======================<phase: configure >============================
===> Configuring for libR-3.2.2
libquadmath is not available for your compiler and architecture: please enable the MISSING option.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/libR
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