[package - head-mips-default][biology/mapm3] Failed for mapm3-3.0 in package
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Nov 26 07:51:19 UTC 2015
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: tphilipp at potion-studios.com
Last committer: riggs at FreeBSD.org
Ident: $FreeBSD: head/biology/mapm3/Makefile 339532 2014-01-12 19:07:28Z riggs $
Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p402431_s291353/logs/mapm3-3.0.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p402431_s291353
Log:
====>> Building biology/mapm3
build started at Thu Nov 26 07:39:26 UTC 2015
port directory: /usr/ports/biology/mapm3
building for: FreeBSD head-mips-default-job-03 11.0-CURRENT FreeBSD 11.0-CURRENT r291353 mips
maintained by: tphilipp at potion-studios.com
Makefile ident: $FreeBSD: head/biology/mapm3/Makefile 339532 2014-01-12 19:07:28Z riggs $
Poudriere version: 3.1.10
Host OSVERSION: 1100085
Jail OSVERSION: 1100090
!!! Jail is newer than host. (Jail: 1100090, Host: 1100085) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100090
UNAME_v=FreeBSD 11.0-CURRENT r291353
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=mapm3-3.0
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.10
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mapm3/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mapm3/work HOME=/wrkdirs/usr/ports/biology/mapm3/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mapm3/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mapm3/work HOME=/wrkdirs/usr/ports/biology/mapm3/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/mapm3"
EXAMPLESDIR="share/examples/mapm3"
DATADIR="share/mapm3"
WWWDIR="www/mapm3"
ETCDIR="etc/mapm3"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/mapm3
DOCSDIR=/usr/local/share/doc/mapm3
EXAMPLESDIR=/usr/local/share/examples/mapm3
WWWDIR=/usr/local/www/mapm3
ETCDIR=/usr/local/etc/mapm3
--End SUB_LIST--
---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
<snip>
General Information...
About MAPMAKER...
Release Notes...
Starting MAPMAKER...
Tutorial...
entering commands...
abbreviating commands...
keyboard editing...
PostScript Output...
Basic Commands...
help...
photo...
prepare data...
load data...
save data...
quit...
Sequences...
sequence...
history...
expand sequence...
insert...
append...
delete...
edit sequence...
let...
names...
forget named sequence...
translate...
Two-Point Analysis...
two point...
lod table...
big lods...
near...
links...
pairwise...
group...
default linkage criteria...
suggest subset...
informativeness criteria...
Multipoint Analysis...
map...
draw map...
compare...
try...
ripple...
order...
build...
multipoint criteria...
Genome Analysis...
make chromosome...
assign...
attach...
unassign...
anchor...
framework...
place...
together...
list loci...
list status...
list chromosomes...
list assignments...
draw chromosome...
draw all chromosomes...
age...
class...
make class...
Error Detection...
error detection...
error probability...
error thresholds...
genotypes...
Three Point...
use three point...
three point...
triple linkage criteria...
triple exclusion criteria...
triple error detection...
forget three point...
Joining Haplotypes...
join haplotypes...
list haplotypes...
restore haplotypes...
Parameters and Options...
print names...
print maps...
tolerance...
auto save data...
units...
centimorgan function...
more mode...
Miscellaneous Commands...
previous commands...
review output...
change directory...
run...
time...
comment...
remark...
system...
import data...
export data...
wizard mode...
./lib/makehelp done
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./mapm/mapmhelp.c -o ./mapm/mapmhelp.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./mapm/database.c -o ./mapm/database.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./mapm/ps_maps.c -o ./mapm/ps_maps.o
/nxb-bin/usr/bin/cc ./mapm/state.o ./mapm/reader.o ./mapm/ctm.o ./mapm/print.o ./mapm/sequence.o ./mapm/main.o ./mapm/quick23.o ./mapm/maps.o ./mapm/info.o ./mapm/chroms.o ./mapm/orders.o ./mapm/sys_cmds.o ./mapm/two_cmds.o ./mapm/npt_cmds.o ./mapm/auto_cmd.o ./mapm/mapmhelp.o ./mapm/database.o ./mapm/ps_maps.o lib.o -lm -ltermcap -o mapmaker
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qcmds.c -o ./quant/qcmds.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qctm.c -o ./quant/qctm.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qdata.c -o ./quant/qdata.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qseq.c -o ./quant/qseq.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qtop.c -o ./quant/qtop.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qraw.c -o ./quant/qraw.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qprint.c -o ./quant/qprint.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qcontext.c -o ./quant/qcontext.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qwiggle.c -o ./quant/qwiggle.o
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qps_scan.c -o ./quant/qps_scan.o
./lib/makehelp ./quant/qtlhelp.src ./quant/qtlhelp.c qtl.help qtl.ps
General Information...
About MAPMAKER/QTL...
Release Notes...
Starting MAPMAKER/QTL...
Tutorial...
entering commands...
abbreviating commands...
keyboard editing...
PostScript Output...
Basic Commands...
help...
photo...
load data...
save data...
quit...
Sequences...
sequence...
history...
list loci...
edit sequence...
let...
names...
forget named sequence...
Traits...
trait...
make trait...
show trait...
list traits...
forget trait...
Mapping Commands...
map...
scan...
list scans...
show scan...
draw scan...
forget scan...
forget all scans...
show peaks...
show trys...
compare...
list compares...
show compare...
forget compare...
forget all compares...
show best maps...
show linkage map...
Parameters and Options...
print names...
units...
auto save data...
more mode...
Miscellaneous Commands...
run...
change directory...
system...
previous commands...
review output...
time...
comment...
wizard mode...
./lib/makehelp done
/nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qtlhelp.c -o ./quant/qtlhelp.o
/nxb-bin/usr/bin/cc ./quant/qcmds.o ./quant/qctm.o ./quant/qdata.o ./quant/qseq.o ./quant/qtop.o ./quant/qraw.o ./quant/qprint.o ./quant/qcontext.o ./quant/qwiggle.o ./quant/qps_scan.o ./quant/qtlhelp.o lib.o -lm -ltermcap -o qtl
===========================================================================
=======================<phase: run-depends >============================
===========================================================================
=======================<phase: stage >============================
===> Staging for mapm3-3.0
===> Generating temporary packing list
cp mapmaker mapmaker.help xmapmaker /wrkdirs/usr/ports/biology/mapm3/work/stage/usr/local/bin
cp qtl qtl.help xqtl /wrkdirs/usr/ports/biology/mapm3/work/stage/usr/local/bin
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package >============================
===> Building package for mapm3-3.0
pkg-static: "/var/run/ld-elf.so.hints": invalid file format
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/mapm3
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