[package - head-mips-default][science/openbabel] Failed for openbabel-2.3.2_2 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Wed Oct 14 12:21:53 UTC 2015
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: makc at FreeBSD.org
Last committer: makc at FreeBSD.org
Ident: $FreeBSD: head/science/openbabel/Makefile 395231 2015-08-25 10:03:08Z makc $
Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p399200_s289229/logs/openbabel-2.3.2_2.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p399200_s289229
Log:
====>> Building science/openbabel
build started at Wed Oct 14 12:17:00 UTC 2015
port directory: /usr/ports/science/openbabel
building for: FreeBSD head-mips-default-job-02 11.0-CURRENT FreeBSD 11.0-CURRENT r289229 mips
maintained by: makc at FreeBSD.org
Makefile ident: $FreeBSD: head/science/openbabel/Makefile 395231 2015-08-25 10:03:08Z makc $
Poudriere version: 3.1.8
Host OSVERSION: 1100079
Jail OSVERSION: 1100080
!!! Jail is newer than host. (Jail: 1100080, Host: 1100079) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100080
UNAME_v=FreeBSD 11.0-CURRENT r289229
UNAME_r=11.0-CURRENT
LC_COLLATE=C
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=openbabel-2.3.2_2
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.8
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for openbabel-2.3.2_2:
CAIRO=off: PNG support via cairo library
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
VERSION="2.3.2"
CAIRO="@comment
"
NO_CAIRO=""
PYTHON=""
NO_PYTHON="@comment
"
CMAKE_BUILD_TYPE="release"
PYTHON_INCLUDEDIR=include/python2.7
PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd11
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_VERSION=python2.7
PYTHON_VER=2.7
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
DOCSDIR="share/doc/openbabel"
EXAMPLESDIR="share/examples/openbabel"
DATADIR="share/openbabel"
WWWDIR="www/openbabel"
ETCDIR="etc/openbabel"
--End PLIST_SUB--
--SUB_LIST--
CAIRO="@comment
"
NO_CAIRO=""
PYTHON=""
NO_PYTHON="@comment
"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/openbabel
DOCSDIR=/usr/local/share/doc/openbabel
EXAMPLESDIR=/usr/local/share/examples/openbabel
WWWDIR=/usr/local/www/openbabel
ETCDIR=/usr/local/etc/openbabel
--End SUB_LIST--
---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
<snip>
/nxb-bin/usr/bin/sed -i.bak -e 's,share/man,man,' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/doc/CMakeLists.txt
/nxb-bin/usr/bin/sed -i.bak -e '/find_package(Cairo)/d' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/CMakeLists.txt
===========================================================================
=======================<phase: build-depends >============================
===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - not found
===> Installing existing package /packages/All/eigen-3.2.2_1.txz
[head-mips-default-job-02] Installing eigen-3.2.2_1...
[head-mips-default-job-02] Extracting eigen-3.2.2_1: .......... done
===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - found
===> Returning to build of openbabel-2.3.2_2
===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.3.1.txz
[head-mips-default-job-02] Installing cmake-3.3.1...
[head-mips-default-job-02] `-- Installing expat-2.1.0_3...
[head-mips-default-job-02] `-- Extracting expat-2.1.0_3: .......... done
[head-mips-default-job-02] `-- Installing cmake-modules-3.3.1...
[head-mips-default-job-02] `-- Extracting cmake-modules-3.3.1: .......... done
[head-mips-default-job-02] `-- Installing curl-7.45.0...
[head-mips-default-job-02] | `-- Installing ca_root_nss-3.20...
[head-mips-default-job-02] | `-- Extracting ca_root_nss-3.20: ....... done
[head-mips-default-job-02] `-- Extracting curl-7.45.0: .......... done
[head-mips-default-job-02] `-- Installing libarchive-3.1.2_4,1...
[head-mips-default-job-02] | `-- Installing lzo2-2.09...
[head-mips-default-job-02] | `-- Extracting lzo2-2.09: .......... done
[head-mips-default-job-02] `-- Extracting libarchive-3.1.2_4,1: .......... done
[head-mips-default-job-02] `-- Installing jsoncpp-0.6.0.r2_2...
[head-mips-default-job-02] `-- Extracting jsoncpp-0.6.0.r2_2: .......... done
[head-mips-default-job-02] Extracting cmake-3.3.1: .......... done
Message from ca_root_nss-3.20:
********************************* WARNING *********************************
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
*********************************** NOTE **********************************
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
***************************************************************************
===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - found
===> Returning to build of openbabel-2.3.2_2
===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - not found
===> Installing existing package /packages/All/python27-2.7.10.txz
[head-mips-default-job-02] Installing python27-2.7.10...
[head-mips-default-job-02] `-- Installing libffi-3.2.1...
[head-mips-default-job-02] | `-- Installing indexinfo-0.2.3...
[head-mips-default-job-02] | `-- Extracting indexinfo-0.2.3: .... done
[head-mips-default-job-02] `-- Extracting libffi-3.2.1: .......... done
[head-mips-default-job-02] `-- Installing gettext-runtime-0.19.6...
[head-mips-default-job-02] `-- Extracting gettext-runtime-0.19.6: .......... done
[head-mips-default-job-02] `-- Installing readline-6.3.8...
[head-mips-default-job-02] `-- Extracting readline-6.3.8: .......... done
[head-mips-default-job-02] Extracting python27-2.7.10: .......... done
Message from python27-2.7.10:
=====================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
=====================================================================
===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - found
===> Returning to build of openbabel-2.3.2_2
===========================================================================
=======================<phase: lib-depends >============================
===> openbabel-2.3.2_2 depends on shared library: libxml2.so - not found
===> Installing existing package /packages/All/libxml2-2.9.2_3.txz
[head-mips-default-job-02] Installing libxml2-2.9.2_3...
[head-mips-default-job-02] Extracting libxml2-2.9.2_3: .......... done
===> openbabel-2.3.2_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===> Returning to build of openbabel-2.3.2_2
===========================================================================
=======================<phase: configure >============================
===> Configuring for openbabel-2.3.2_2
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/openbabel/work/.build
-- The C compiler identification is GNU 4.2.1
-- The CXX compiler identification is GNU 4.2.1
-- Check for working C compiler: /nxb-bin/usr/bin/cc
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Using included inchi library.
-- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.2")
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.8")
-- Could NOT find wxWidgets (missing: wxWidgets_FOUND)
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - not found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_c4e70/fast"
-- Looking for snprintf - not found
-- Looking for sranddev
-- Looking for sranddev - found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_2932b/fast"
-- Looking for strncasecmp - not found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0")
-- Could NOT find Cairo. PNG output will NOT be supported.
-- Looking for getopt
-- Looking for getopt - found
-- GUI will not be built
CMake Warning (dev) at test/CMakeLists.txt:171 (include):
Syntax Warning in cmake code at
/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14
Argument not separated from preceding token by whitespace.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at test/CMakeLists.txt:171 (include):
Syntax Warning in cmake code at
/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31
Argument not separated from preceding token by whitespace.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at test/CMakeLists.txt:171 (include):
Syntax Warning in cmake code at
/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25
Argument not separated from preceding token by whitespace.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at test/CMakeLists.txt:171 (include):
Syntax Warning in cmake code at
/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39
Argument not separated from preceding token by whitespace.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.10")
-- Found PythonLibs: /usr/local/lib/libpython2.7.so (found version "2.7.10")
-- Python bindings will be compiled
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/openbabel
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