[package - head-mips-default][science/openbabel] Failed for openbabel-2.3.2_2 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Jul 16 19:16:24 UTC 2015
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: makc at FreeBSD.org
Last committer: marino at FreeBSD.org
Ident: $FreeBSD: head/science/openbabel/Makefile 384227 2015-04-18 13:49:18Z marino $
Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p392247_s285616/logs/openbabel-2.3.2_2.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p392247_s285616
Log:
====>> Building science/openbabel
build started at Thu Jul 16 15:50:07 UTC 2015
port directory: /usr/ports/science/openbabel
building for: FreeBSD head-mips-default-job-09 11.0-CURRENT FreeBSD 11.0-CURRENT r285616 mips
maintained by: makc at FreeBSD.org
Makefile ident: $FreeBSD: head/science/openbabel/Makefile 384227 2015-04-18 13:49:18Z marino $
Poudriere version: 3.1.7
Host OSVERSION: 1100076
Jail OSVERSION: 1100077
!!! Jail is newer than host. (Jail: 1100077, Host: 1100076) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100077
UNAME_v=FreeBSD 11.0-CURRENT r285616
UNAME_r=11.0-CURRENT
LC_COLLATE=C
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=openbabel-2.3.2_2
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.7
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LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
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---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for openbabel-2.3.2_2:
CAIRO=off: PNG support via cairo library
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
VERSION="2.3.2"
CAIRO="@comment
"
NO_CAIRO=""
PYTHON=""
NO_PYTHON="@comment
"
CMAKE_BUILD_TYPE="release"
PYTHON_INCLUDEDIR=include/python2.7
PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd11
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_VERSION=python2.7
PYTHON_VER=2.7
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
DOCSDIR="share/doc/openbabel"
EXAMPLESDIR="share/examples/openbabel"
DATADIR="share/openbabel"
WWWDIR="www/openbabel"
ETCDIR="etc/openbabel"
--End PLIST_SUB--
--SUB_LIST--
CAIRO="@comment
"
NO_CAIRO=""
PYTHON=""
NO_PYTHON="@comment
"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/openbabel
DOCSDIR=/usr/local/share/doc/openbabel
EXAMPLESDIR=/usr/local/share/examples/openbabel
WWWDIR=/usr/local/www/openbabel
ETCDIR=/usr/local/etc/openbabel
--End SUB_LIST--
---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
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RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
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OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
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OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
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NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
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[ 63%] Built target mmodformat
/nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend
cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake
Scanning dependencies of target mol2format
/nxb-bin/usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles
[ 63%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o
cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmol2format_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/mol2format.dir/mol2format.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/mol2format.cpp
Linking CXX shared module ../../lib/mol2format.so
cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1
/nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,mol2format.so -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib:
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles
[ 63%] Built target mol2format
/nxb-bin/usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend
cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake
Scanning dependencies of target moldenformat
/nxb-bin/usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 34
[ 64%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o
cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmoldenformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/moldenformat.dir/moldenformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/moldenformat.cpp
Linking CXX shared module ../../lib/moldenformat.so
cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1
/nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -shared -Wl,-soname,moldenformat.so -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.o -lm -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.4.0.2 -lc -lm -lz -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib:
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles 34
[ 64%] Built target moldenformat
/nxb-bin/usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend
cd /wrkdirs/usr/ports/science/openbabel/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2 /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake
Scanning dependencies of target molproformat
/nxb-bin/usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles
[ 64%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o
cd /wrkdirs/usr/ports/science/openbabel/work/.build/src/formats && /nxb-bin/usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dmolproformat_EXPORTS -O2 -pipe -G0 -fno-strict-aliasing -O2 -pipe -G0 -fno-strict-aliasing -O2 -DNDEBUG -fPIC -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/include/inchi -I/usr/local/include/libxml2 -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -o CMakeFiles/molproformat.dir/molproformat.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/src/formats/molproformat.cpp
*** Signal 15
Stop.
make: stopped in /usr/ports/science/openbabel
c++: Internal error: Terminated (program cc1plus)
Please submit a full bug report.
See <URL:http://www.freebsd.org/support.html> for instructions.
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/openbabel/work/.build
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/openbabel/work/.build
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/openbabel/work/.build
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