[package - 101amd64-default][biology/ugene] Failed for ugene-1.16.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Apr 7 02:47:04 UTC 2015
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: h2+fbsdports at fsfe.org
Last committer: danfe at FreeBSD.org
Ident: $FreeBSD: head/biology/ugene/Makefile 381974 2015-03-23 01:44:43Z danfe $
Log URL: http://beefy6.nyi.freebsd.org/data/101amd64-default/383446/logs/ugene-1.16.1.log
Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=101amd64-default&build=383446
Log:
====>> Building biology/ugene
build started at Tue Apr 7 00:54:22 UTC 2015
port directory: /usr/ports/biology/ugene
building for: FreeBSD 101amd64-default-job-21 10.1-RELEASE-p8 FreeBSD 10.1-RELEASE-p8 amd64
maintained by: h2+fbsdports at fsfe.org
Makefile ident: $FreeBSD: head/biology/ugene/Makefile 381974 2015-03-23 01:44:43Z danfe $
Poudriere version: 3.1.3
Host OSVERSION: 1100064
Jail OSVERSION: 1001000
---Begin Environment---
OSVERSION=1001000
UNAME_v=FreeBSD 10.1-RELEASE-p8
UNAME_r=10.1-RELEASE-p8
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
MASTERMNT=/usr/local/poudriere/data/.m/101amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=ugene-1.16.1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/101amd64-default/ref/.p/pool
MASTERNAME=101amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.3
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for ugene-1.16.1:
DOCS=on: Install official UGENE documentation (PDF)
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt4 --with-qt-libraries=/usr/local/lib/qt4 --with-extra-includes=/usr/local/include --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
QTDIR="/usr/local" QMAKE="/usr/local/bin/qmake-qt4" MOC="/usr/local/bin/moc-qt4" RCC="/usr/local/bin/rcc" UIC="/usr/local/bin/uic-qt4" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--PLIST_SUB--
QT_PREFIX="/usr/local"
QT_BINDIR="bin"
QT_INCDIR="include/qt4"
QT_LIBDIR="lib/qt4"
QT_ARCHDIR="lib/qt4/qt4"
QT_PLUGINDIR="lib/qt4/plugins"
QT_LIBEXECDIR="libexec/qt4"
QT_IMPORTDIR="lib/qt4/imports"
QT_QMLDIR="lib/qt4/qt4/qml"
QT_DATADIR="share/qt4"
QT_DOCDIR="share/doc/qt4"
QT_L10NDIR="share/qt4/translations"
QT_ETCDIR="etc/xdg"
QT_EXAMPLEDIR="share/examples/qt4"
QT_TESTDIR="share/qt4/tests"
QT_MKSPECDIR="share/qt4/mkspecs"
NOX64="@comment
"
SSE2=""
OSREL=10.1
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
DOCSDIR="share/ugene/manuals"
EXAMPLESDIR="share/examples/ugene"
DATADIR="share/ugene"
WWWDIR="www/ugene"
ETCDIR="etc/ugene"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/ugene
DOCSDIR=/usr/local/share/ugene/manuals
EXAMPLESDIR=/usr/local/share/examples/ugene
WWWDIR=/usr/local/www/ugene
ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ugene-1.16.1 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.4.12.txz
[101amd64-default-job-21] Installing pkg-1.4.12...
[101amd64-default-job-21] Extracting pkg-1.4.12... done
Message for pkg-1.4.12:
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of ugene-1.16.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.16.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.16.1 for building
=> SHA256 Checksum OK for ugene/ugene-1.16.1.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.16.1 for building
===> Extracting for ugene-1.16.1
=> SHA256 Checksum OK for ugene/ugene-1.16.1.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
/bin/cp -p /portdistfiles/ugene/*.pdf /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1/data/manuals
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ugene-1.16.1
===========================================================================
=======================<phase: build-depends >============================
===> ugene-1.16.1 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in /usr/ports/x11/glproto
===> Installing existing package /packages/All/glproto-1.4.17.txz
[101amd64-default-job-21] Installing glproto-1.4.17...
[101amd64-default-job-21] Extracting glproto-1.4.17... done
===> Returning to build of ugene-1.16.1
===> ugene-1.16.1 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in /usr/ports/x11/dri2proto
===> Installing existing package /packages/All/dri2proto-2.8.txz
[101amd64-default-job-21] Installing dri2proto-2.8...
[101amd64-default-job-21] Extracting dri2proto-2.8... done
===> Returning to build of ugene-1.16.1
===> ugene-1.16.1 depends on file: /usr/local/libdata/pkgconfig/xtst.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/xtst.pc in /usr/ports/x11/libXtst
===> Installing existing package /packages/All/libXtst-1.2.2_2.txz
[101amd64-default-job-21] Installing libXtst-1.2.2_2...
[101amd64-default-job-21] `-- Installing inputproto-2.3.1...
[101amd64-default-job-21] `-- Extracting inputproto-2.3.1... done
[101amd64-default-job-21] `-- Installing libX11-1.6.2_2,1...
[101amd64-default-job-21] | `-- Installing kbproto-1.0.6...
[101amd64-default-job-21] | `-- Extracting kbproto-1.0.6... done
[101amd64-default-job-21] | `-- Installing libXau-1.0.8_2...
[101amd64-default-job-21] | | `-- Installing xproto-7.0.26...
[101amd64-default-job-21] | | `-- Extracting xproto-7.0.26... done
[101amd64-default-job-21] | `-- Extracting libXau-1.0.8_2... done
[101amd64-default-job-21] | `-- Installing libXdmcp-1.1.1_2...
[101amd64-default-job-21] | `-- Extracting libXdmcp-1.1.1_2... done
[101amd64-default-job-21] | `-- Installing libxcb-1.11...
[101amd64-default-job-21] | | `-- Installing libpthread-stubs-0.3_6...
[101amd64-default-job-21] | | `-- Extracting libpthread-stubs-0.3_6... done
[101amd64-default-job-21] | | `-- Installing libxml2-2.9.2_2...
[101amd64-default-job-21] | | `-- Extracting libxml2-2.9.2_2... done
[101amd64-default-job-21] | `-- Extracting libxcb-1.11... done
[101amd64-default-job-21] `-- Extracting libX11-1.6.2_2,1... done
[101amd64-default-job-21] `-- Installing libXext-1.3.3,1...
[101amd64-default-job-21] | `-- Installing xextproto-7.3.0...
[101amd64-default-job-21] | `-- Extracting xextproto-7.3.0... done
[101amd64-default-job-21] `-- Extracting libXext-1.3.3,1... done
[101amd64-default-job-21] `-- Installing libXi-1.7.4,1...
[101amd64-default-job-21] | `-- Installing libXfixes-5.0.1_2...
[101amd64-default-job-21] | | `-- Installing fixesproto-5.0...
[101amd64-default-job-21] | | `-- Extracting fixesproto-5.0... done
[101amd64-default-job-21] | `-- Extracting libXfixes-5.0.1_2... done
[101amd64-default-job-21] `-- Extracting libXi-1.7.4,1... done
[101amd64-default-job-21] `-- Installing recordproto-1.14.2...
<snip>
In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1:
In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28:
./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual]
virtual void ensureVisible( const Annotation &a, int locationIdx );
^
./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &')
virtual void ensureVisible( const AnnotationData &a,
^
In file included from src/tests/common_scenarios/msa_editor/edit/GTTestsMSAEditorEdit.cpp:44:
src/runnables/ugene/corelibs/U2Gui/util/RenameSequenceFiller.h:32:98: warning: reference 'os' is not yet bound to a value when used here [-Wuninitialized]
RenameSequenceFiller(U2OpStatus &_os, QString _newName, QString _oldName = QString()):Filler(os, ""),os(_os), newName(_newName), oldName(_oldName){}
^
8 warnings generated.
c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.16.1 -DUGENE_MIN_VERSION_SQLITE=1.13.0 -DUGENE_MIN_VERSION_MYSQL=1.16.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=16 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -I../../corelibs/U2View/_tmp -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTTestsMSAE
ditorOverview.o src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp
In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp:22:
In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.h:24:
In file included from ../../include/U2Test/GUITestBase.h:1:
In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:4:
In file included from ../../include/U2Core/global.h:1:
In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/global.h:28:
In file included from /usr/local/include/qt4/QtCore/QVariantMap:1:
In file included from /usr/local/include/qt4/QtCore/qvariant.h:48:
/usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register int id = qMetaTypeId<T>();
^~~~~~~~~
In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp:22:
In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.h:24:
In file included from ../../include/U2Test/GUITestBase.h:1:
In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:5:
In file included from ../../include/U2Core/Task.h:1:
In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/Task.h:26:
In file included from ../../include/U2Core/Log.h:1:
In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/Log.h:29:
In file included from /usr/local/include/qt4/QtCore/QTime:1:
In file included from /usr/local/include/qt4/QtCore/qdatetime.h:47:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register int tmp = o->strongref;
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = static_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = const_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = qobject_cast<X *>(src.data());
^~~~~~~~~
In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp:22:
In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.h:24:
In file included from ../../include/U2Test/GUITestBase.h:1:
In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:10:
In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1:
In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28:
./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual]
virtual void ensureVisible( const Annotation &a, int locationIdx );
^
./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &')
virtual void ensureVisible( const AnnotationData &a,
^
7 warnings generated.
c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.16.1 -DUGENE_MIN_VERSION_SQLITE=1.13.0 -DUGENE_MIN_VERSION_MYSQL=1.16.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=16 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -I../../corelibs/U2View/_tmp -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTTestsAnno
tations.o src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp
In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp:22:
In file included from /usr/local/include/qt4/QtGui/QTreeWidget:1:
In file included from /usr/local/include/qt4/QtGui/qtreewidget.h:45:
In file included from /usr/local/include/qt4/QtGui/qtreeview.h:45:
In file included from /usr/local/include/qt4/QtGui/qabstractitemview.h:45:
In file included from /usr/local/include/qt4/QtGui/qabstractscrollarea.h:45:
In file included from /usr/local/include/qt4/QtGui/qframe.h:45:
In file included from /usr/local/include/qt4/QtGui/qwidget.h:50:
In file included from /usr/local/include/qt4/QtGui/qpalette.h:47:
In file included from /usr/local/include/qt4/QtGui/qbrush.h:53:
In file included from /usr/local/include/qt4/QtGui/qpixmap.h:49:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register int tmp = o->strongref;
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = static_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = const_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = qobject_cast<X *>(src.data());
^~~~~~~~~
In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp:22:
In file included from /usr/local/include/qt4/QtGui/QTreeWidget:1:
In file included from /usr/local/include/qt4/QtGui/qtreewidget.h:45:
In file included from /usr/local/include/qt4/QtGui/qtreeview.h:45:
In file included from /usr/local/include/qt4/QtGui/qabstractitemview.h:46:
In file included from /usr/local/include/qt4/QtCore/qabstractitemmodel.h:45:
In file included from /usr/local/include/qt4/QtCore/qvariant.h:48:
/usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register int id = qMetaTypeId<T>();
^~~~~~~~~
In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp:24:
In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.h:25:
In file included from ../../include/U2Test/GUITestBase.h:1:
In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:10:
In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1:
In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28:
./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual]
virtual void ensureVisible( const Annotation &a, int locationIdx );
^
./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &')
virtual void ensureVisible( const AnnotationData &a,
^
7 warnings generated.
c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.16.1 -DUGENE_MIN_VERSION_SQLITE=1.13.0 -DUGENE_MIN_VERSION_MYSQL=1.16.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=16 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -I../../corelibs/U2View/_tmp -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTTestsCrea
teAnnotationWidget.o src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp
In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:23:
In file included from /usr/local/include/qt4/QtCore/QAbstractItemModel:1:
In file included from /usr/local/include/qt4/QtCore/qabstractitemmodel.h:45:
In file included from /usr/local/include/qt4/QtCore/qvariant.h:48:
/usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register int id = qMetaTypeId<T>();
^~~~~~~~~
In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:24:
In file included from /usr/local/include/qt4/QtGui/QListWidget:1:
In file included from /usr/local/include/qt4/QtGui/qlistwidget.h:45:
In file included from /usr/local/include/qt4/QtGui/qlistview.h:45:
In file included from /usr/local/include/qt4/QtGui/qabstractitemview.h:45:
In file included from /usr/local/include/qt4/QtGui/qabstractscrollarea.h:45:
In file included from /usr/local/include/qt4/QtGui/qframe.h:45:
In file included from /usr/local/include/qt4/QtGui/qwidget.h:50:
In file included from /usr/local/include/qt4/QtGui/qpalette.h:47:
In file included from /usr/local/include/qt4/QtGui/qbrush.h:53:
In file included from /usr/local/include/qt4/QtGui/qpixmap.h:49:
In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50:
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register int tmp = o->strongref;
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = static_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = const_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid
^~~~~~~~~
/usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register X *ptr = qobject_cast<X *>(src.data());
^~~~~~~~~
In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:27:
In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.h:25:
In file included from ../../include/U2Test/GUITestBase.h:1:
In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:10:
In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1:
In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28:
./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual]
virtual void ensureVisible( const Annotation &a, int locationIdx );
^
./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &')
virtual void ensureVisible( const AnnotationData &a,
^
src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:3089:1: warning: unused parameter 'os' [-Wunused-parameter]
GUI_TEST_CLASS_DEFINITION(test_0040) {
^
./../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:46:37: note: expanded from macro 'GUI_TEST_CLASS_DEFINITION'
void className::run(U2OpStatus &os)
^
c++: error: unable to execute command: Killed
c++: error: clang frontend command failed due to signal (use -v to see invocation)
FreeBSD clang version 3.4.1 (tags/RELEASE_34/dot1-final 208032) 20140512
Target: x86_64-unknown-freebsd10.1
Thread model: posix
c++: note: diagnostic msg: PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
c++: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
c++: note: diagnostic msg: /tmp/GTTestsCreateAnnotationWidget-d3894f.cpp
c++: note: diagnostic msg: /tmp/GTTestsCreateAnnotationWidget-d3894f.sh
c++: note: diagnostic msg:
********************
*** Error code 254
Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1/src/plugins/GUITestBase
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1/src/plugins/GUITestBase
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ugene
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