[package - head-i386-default-ssp][biology/emboss] Failed for emboss-6.6.0 in package
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Sep 4 12:36:33 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: wen at FreeBSD.org
Last committer: olgeni at FreeBSD.org
Ident: $FreeBSD: head/biology/emboss/Makefile 357139 2014-06-09 11:21:52Z olgeni $
Log URL: http://beefy4.isc.freebsd.org/data/head-i386-default-ssp/2014-09-04_02h27m35s/logs/emboss-6.6.0.log
Build URL: http://beefy4.isc.freebsd.org/build.html?mastername=head-i386-default-ssp&build=2014-09-04_02h27m35s
Log:
====>> Building biology/emboss
build started at Thu Sep 4 12:26:23 UTC 2014
port directory: /usr/ports/biology/emboss
building for: FreeBSD pkg.FreeBSD.org 11.0-CURRENT FreeBSD 11.0-CURRENT r270991 i386
maintained by: wen at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/emboss/Makefile 357139 2014-06-09 11:21:52Z olgeni $
Poudriere version: 3.1-pre
Host OSVERSION: 1100027
Jail OSVERSION: 1100030
!!! Jail is newer than host. (Jail: 1100030, Host: 1100027) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1100030
UNAME_v=FreeBSD 11.0-CURRENT r270991
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default-ssp/ref
PKG_EXT=txz
FORCE_PACKAGE=yes
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=emboss-6.6.0
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/root
PWD=/usr/local/poudriere/data/.m/head-i386-default-ssp/ref/.p/pool
MASTERNAME=head-i386-default-ssp
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/.p/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for emboss-6.6.0:
DOCS=on: Build and/or install documentation
X11=on: X11 (graphics) support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--with-docroot=/usr/local/emboss/share/EMBOSS/doc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh PATH=/usr/local/libexec/ccache:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin CCACHE_DIR="/root/.ccache" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" MOTIFLIB="-L/usr/local/lib -lXm -lXp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local/emboss LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local/emboss" PATH=/usr/local/libexec/ccache:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local/emboss
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/EMBOSS/doc"
EXAMPLESDIR="share/examples/emboss"
DATADIR="share/EMBOSS"
WWWDIR="www/emboss"
ETCDIR="etc/emboss"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local/emboss
DATADIR=/usr/local/emboss/share/EMBOSS
PREFIX=/usr/local/emboss
LOCALBASE=/usr/local
DATADIR=/usr/local/emboss/share/EMBOSS
DOCSDIR=/usr/local/emboss/share/EMBOSS/doc
EXAMPLESDIR=/usr/local/emboss/share/examples/emboss
WWWDIR=/usr/local/emboss/www/emboss
ETCDIR=/usr/local/emboss/etc/emboss
--End SUB_LIST--
---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
WITH_CCACHE_BUILD=yes
CCACHE_DIR=/root/.ccache
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
#WITH_PKGNG=devel
#### /usr/local/etc/poudriere.d/ssp-make.conf ####
WITH_SSP_PORTS=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> emboss-6.6.0 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.3.7.txz
[pkg.FreeBSD.org] Installing pkg-1.3.7... done
Message for pkg-1.3.7:
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of emboss-6.6.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by emboss-6.6.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by emboss-6.6.0 for building
=> SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by emboss-6.6.0 for building
===> Extracting for emboss-6.6.0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by emboss-6.6.0 for building
=> SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for emboss-6.6.0
===> Applying FreeBSD patches for emboss-6.6.0
===========================================================================
=======================<phase: build-depends >============================
===> emboss-6.6.0 depends on executable: clustalw - not found
===> Verifying install for clustalw in /usr/ports/biology/clustalw
===> Installing existing package /packages/All/clustalw-2.1_1.txz
[pkg.FreeBSD.org] Installing clustalw-2.1_1... done
===> Returning to build of emboss-6.6.0
===> emboss-6.6.0 depends on executable: primer3 - not found
===> Verifying install for primer3 in /usr/ports/biology/primer3
===> Installing existing package /packages/All/primer3-2.3.6.txz
[pkg.FreeBSD.org] Installing primer3-2.3.6... done
===> Returning to build of emboss-6.6.0
===> emboss-6.6.0 depends on executable: gmake - not found
===> Verifying install for gmake in /usr/ports/devel/gmake
===> Installing existing package /packages/All/gmake-3.82_1.txz
[pkg.FreeBSD.org] Installing indexinfo-0.2... done
[pkg.FreeBSD.org] Installing gettext-0.18.3.1_1... done
[pkg.FreeBSD.org] Installing gmake-3.82_1... done
===> Returning to build of emboss-6.6.0
===> emboss-6.6.0 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/x11.pc in /usr/ports/x11/libX11
===> Installing existing package /packages/All/libX11-1.6.2_2,1.txz
[pkg.FreeBSD.org] Installing kbproto-1.0.6... done
[pkg.FreeBSD.org] Installing xproto-7.0.26... done
[pkg.FreeBSD.org] Installing libXau-1.0.8_2... done
[pkg.FreeBSD.org] Installing libXdmcp-1.1.1_2... done
[pkg.FreeBSD.org] Installing libpthread-stubs-0.3_5... done
[pkg.FreeBSD.org] Installing libxml2-2.9.1_1... done
[pkg.FreeBSD.org] Installing libxcb-1.10_2... done
[pkg.FreeBSD.org] Installing libX11-1.6.2_2,1... done
===> Returning to build of emboss-6.6.0
===> emboss-6.6.0 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/xpm.pc in /usr/ports/x11/libXpm
===> Installing existing package /packages/All/libXpm-3.5.11_2.txz
[pkg.FreeBSD.org] Installing xextproto-7.3.0... done
[pkg.FreeBSD.org] Installing libXext-1.3.2_2,1... done
[pkg.FreeBSD.org] Installing libICE-1.0.9,1... done
<snip>
gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus'
Making all in emboss
gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
Making all in acd
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd'
Making all in data
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
Making all in AAINDEX
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX'
Making all in CODONS
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS'
Making all in JASPAR_CNE
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE'
Making all in JASPAR_CORE
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE'
Making all in JASPAR_FAM
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM'
Making all in JASPAR_PBM
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM'
Making all in JASPAR_PBM_HLH
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH'
Making all in JASPAR_PBM_HOMEO
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO'
Making all in JASPAR_PHYLOFACTS
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS'
Making all in JASPAR_POLII
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII'
Making all in JASPAR_SPLICE
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE'
Making all in OBO
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO'
Making all in PRINTS
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS'
Making all in PROSITE
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE'
Making all in REBASE
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE'
Making all in TAXONOMY
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY'
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
gmake[8]: Nothing to be done for `all-am'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data'
Making all in index
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index'
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
gmake[7]: Nothing to be done for `all-am'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss'
Making all in test
gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
Making all in data
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data'
Making all in embl
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl'
Making all in genbank
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank'
Making all in pir
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir'
Making all in swiss
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss'
Making all in swnew
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew'
Making all in testdb
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb'
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
gmake[7]: Nothing to be done for `all-am'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test'
Making all in doc
gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
Making all in manuals
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals'
Making all in programs
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
Making all in html
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html'
Making all in text
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text'
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
gmake[8]: Nothing to be done for `all-am'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs'
Making all in tutorials
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials'
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
gmake[7]: Nothing to be done for `all-am'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc'
Making all in jemboss
gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
Making all in images
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images'
Making all in lib
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
Making all in axis
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis'
gmake[8]: Nothing to be done for `all'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis'
gmake[8]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
gmake[8]: Nothing to be done for `all-am'.
gmake[8]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib'
Making all in resources
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources'
Making all in utils
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils'
gmake[7]: Nothing to be done for `all'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils'
gmake[7]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
gmake[7]: Nothing to be done for `all-am'.
gmake[7]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss'
gmake[6]: Entering directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[6]: Nothing to be done for `all-am'.
gmake[6]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[5]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[4]: Nothing to be done for `install-data-am'.
gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
gmake[2]: Leaving directory `/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0'
install -o root -g wheel -m 444 /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/emboss.default.template /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS
/usr/sbin/chown root:wheel /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/emboss.default.template
====> Compressing man pages (compress-man)
===> Installing ldconfig configuration file
===========================================================================
=======================<phase: package >============================
===> Building package for emboss-6.6.0
pkg-static: lstat(/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/%D/): No such file or directory
make[2]: don't know how to make delete-package-links. Stop
*** Error code 2
Stop.
make[1]: stopped in /usr/ports/biology/emboss
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/emboss
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