[REL - 84amd64-default][science/gromacs] Failed for gromacs-4.6.5_2 in build
pkg-fallout-builder at FreeBSD.org
pkg-fallout-builder at FreeBSD.org
Thu Jul 10 02:35:18 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/science/gromacs/Makefile 347809 2014-03-10 20:55:20Z gerald $
Log URL: http://beefy2.isc.freebsd.org/bulk/84amd64-default/2014-07-09_17h04m48s/logs/gromacs-4.6.5_2.log
Build URL: http://beefy2.isc.freebsd.org/bulk/84amd64-default/2014-07-09_17h04m48s
Log:
====>> Building science/gromacs
build started at Thu Jul 10 02:34:09 UTC 2014
port directory: /usr/ports/science/gromacs
building for: FreeBSD 84amd64-default-job-01 8.4-RELEASE-p10 FreeBSD 8.4-RELEASE-p10 amd64
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/science/gromacs/Makefile 347809 2014-03-10 20:55:20Z gerald $
Poudriere version: 3.1-pre
Host OSVERSION: 1100022
Jail OSVERSION: 804000
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OSVERSION=804000
UNAME_v=FreeBSD 8.4-RELEASE-p10
UNAME_r=8.4-RELEASE-p10
FTP_PASSIVE_MODE=YES
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POUDRIERE_BUILD_TYPE=bulk
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PKGNAME=gromacs-4.6.5_2
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/usr/local/poudriere/data/build/84amd64-default/ref/poudriere/rdeps
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---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for gromacs-4.6.5_2:
ATLAS=off: Use ATLAS for BLAS and LAPACK
FLOAT=on: Use single instead of double precision
GSL=on: Extra analysis using math/gsl
SIMD=off: Use CPU-specific optimizations
X11=on: X11 (graphics) support
====> MPI (Message Passing Interface) support: you can only select none or one of them
MPICH=off: MPI support using net/mpich2
OMPI=off: MPI support using net/openmpi
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp"
CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--PLIST_SUB--
ATLAS="@comment
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SITE_PERL=lib/perl5/site_perl/5.16
DOCSDIR="share/doc/gromacs"
EXAMPLESDIR="share/examples/gromacs"
DATADIR="share/gromacs"
WWWDIR="www/gromacs"
ETCDIR="etc/gromacs"
--End PLIST_SUB--
--SUB_LIST--
ATLAS="@comment
"
NO_ATLAS=""
FLOAT=""
NO_FLOAT="@comment
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GSL=""
NO_GSL="@comment
"
SIMD="@comment
"
NO_SIMD=""
X11=""
NO_X11="@comment
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MPICH="@comment
"
NO_MPICH=""
OMPI="@comment
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NO_OMPI=""
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/gromacs
DOCSDIR=/usr/local/share/doc/gromacs
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USE_PACKAGE_DEPENDS=yes
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===> Cleaning for gromacs-4.6.5_2
=======================<phase: check-sanity >============================
===> License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> gromacs-4.6.5_2 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.7_4.txz
Installing pkg-1.2.7_4... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of gromacs-4.6.5_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_2 for building
=> SHA256 Checksum OK for gromacs-4.6.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_2 for building
===> Extracting for gromacs-4.6.5_2
=> SHA256 Checksum OK for gromacs-4.6.5.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for gromacs-4.6.5_2
===> Applying FreeBSD patches for gromacs-4.6.5_2
===========================================================================
=======================<phase: build-depends >============================
===> gromacs-4.6.5_2 depends on package: fftw3>0 - not found
===> Verifying install for fftw3>0 in /usr/ports/math/fftw3
===> Installing existing package /packages/All/fftw3-3.3.3_1.txz
Installing fftw3-3.3.3_1...Installing indexinfo-0.2... done
done
===> Returning to build of gromacs-4.6.5_2
<snip>
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/txtdump.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/txtdump.c
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[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sighandler.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/sighandler.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sighandler.c
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[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gbutil.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gbutil.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gbutil.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/wman.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/wman.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/wman.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/smalloc.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/smalloc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/smalloc.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 16
[ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/calch.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/calch.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/calch.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/warninp.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/warninp.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/statutil.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/statutil.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmxfio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/atomprop.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/atomprop.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_random.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_random.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_sort.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_sort.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ifunc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ifunc.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/copyrite.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/copyrite.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_matrix.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_matrix.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_matrix.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/trnio.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/trnio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/trnio.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrnb.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nrnb.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nrnb.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 22
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/md_logging.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/md_logging.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/md_logging.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/ewald_util.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ewald_util.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ewald_util.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/invblock.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/invblock.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/invblock.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/mvdata.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/mvdata.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/mvdata.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cyclecounter.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_cyclecounter.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_cyclecounter.c
{standard input}: Assembler messages:
{standard input}:25: Error: no such instruction: `rdtscp'
{standard input}:77: Error: no such instruction: `rdtscp'
*** Error code 1
Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1
Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1
Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1
Stop in /usr/ports/science/gromacs.
===> Cleaning for gromacs-4.6.5_2
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