[REL - 84i386-default][math/scilab] Failed for scilab-5.3.3_9 in configure
pkg-fallout-builder at FreeBSD.org
pkg-fallout-builder at FreeBSD.org
Wed Jul 9 20:55:42 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: makc at FreeBSD.org
Last committer: makc at FreeBSD.org
Ident: $FreeBSD: head/math/scilab/Makefile 352097 2014-04-25 08:46:05Z makc $
Log URL: http://beefy1.isc.freebsd.org/bulk/84i386-default/2014-07-09_16h35m32s/logs/scilab-5.3.3_9.log
Build URL: http://beefy1.isc.freebsd.org/bulk/84i386-default/2014-07-09_16h35m32s
Log:
====>> Building math/scilab
build started at Wed Jul 9 20:54:51 UTC 2014
port directory: /usr/ports/math/scilab
building for: FreeBSD 84i386-default-job-23 8.4-RELEASE-p10 FreeBSD 8.4-RELEASE-p10 i386
maintained by: makc at FreeBSD.org
Makefile ident: $FreeBSD: head/math/scilab/Makefile 352097 2014-04-25 08:46:05Z makc $
Poudriere version: 3.1-pre
Host OSVERSION: 1100022
Jail OSVERSION: 804000
---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=804000
UNAME_v=FreeBSD 8.4-RELEASE-p10
UNAME_r=8.4-RELEASE-p10
FTP_PASSIVE_MODE=YES
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/build/84i386-default/ref
PKG_EXT=txz
tpid=84928
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=scilab-5.3.3_9
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/usr/local/poudriere/data/build/84i386-default/ref/poudriere/rdeps
PWD=/usr/local/poudriere/data/build/84i386-default/ref/poudriere/pool
MASTERNAME=84i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for scilab-5.3.3_9:
ATLAS=off: Use Atlas instead of Blas
FFTW=on: Discrete Fourier Transform support
GUI=on: Build GUI (requires Java)
HELP=on: Help Browser (Java based, requires GUI)
MATIO=off: Matlab compatibility
NLS=on: Native Language Support
OCAML=off: Build OCaml modelica compiler (requires GUI)
PVM=off: Parallel Virtual Machine support
TK=off: Tk GUI toolkit support
UMFPACK=off: Build with umfpack
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--with-gfortran --without-hdf5 --enable-build-localization --without-tk --with-jdk=/usr/local/openjdk7 --with-docbook=/usr/local/share/xsl/docbook --enable-build-help --enable-build-swig --without-pvm --without-umfpack --without-matio --without-modelica --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_search_pthread_join="-pthread" BLAS_LIBS="-lblas" LAPACK_LIBS="-llapack" XDG_DATA_HOME=/wrkdirs/usr/ports/math/scilab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/scilab/work HOME=/wrkdirs/usr/ports/math/scilab/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/math/scilab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/scilab/work HOME=/wrkdirs/usr/ports/math/scilab/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" MAKE=gmake PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/co
nfig.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
HOME=/dev/null XDG_DATA_HOME=/wrkdirs/usr/ports/math/scilab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/scilab/work HOME=/wrkdirs/usr/ports/math/scilab/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/math/scilab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/scilab/work HOME=/wrkdirs/usr/ports/math/scilab/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS=
"-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--PLIST_SUB--
NLS=""
WITHOUT_GUI="@comment
"
OCAML="@comment
"
JAVASHAREDIR="share/java"
JAVAJARDIR="share/java/classes"
OSREL=8.4
PREFIX=%D
LOCALBASE=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
PORTDATA=""
LIB32DIR=lib
DOCSDIR="share/doc/scilab"
EXAMPLESDIR="share/examples/scilab"
DATADIR="share/scilab"
WWWDIR="www/scilab"
ETCDIR="etc/scilab"
--End PLIST_SUB--
--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"
JAVAJARDIR="/usr/local/share/java/classes"
JAVALIBDIR="/usr/local/share/java/classes"
JAVA_VERSION="1.6+"
JAVA_VENDOR="openjdk"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/scilab
DOCSDIR=/usr/local/share/doc/scilab
EXAMPLESDIR=/usr/local/share/examples/scilab
WWWDIR=/usr/local/www/scilab
ETCDIR=/usr/local/etc/scilab
--End SUB_LIST--
---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
# clean-restricted via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for scilab-5.3.3_9
=======================<phase: check-sanity >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> scilab-5.3.3_9 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.7_4.txz
Installing pkg-1.2.7_4... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of scilab-5.3.3_9
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by scilab-5.3.3_9 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by scilab-5.3.3_9 for building
=> SHA256 Checksum OK for scilab-5.3.3-src.tar.gz.
=> SHA256 Checksum OK for saxon6-5-5.zip.
=> SHA256 Checksum OK for jgraphx-1_4_1_0.jar.
===========================================================================
=======================<phase: extract-depends>============================
===> scilab-5.3.3_9 depends on file: /usr/local/bin/unzip - not found
===> Verifying install for /usr/local/bin/unzip in /usr/ports/archivers/unzip
===> Installing existing package /packages/All/unzip-6.0_1.txz
Installing unzip-6.0_1... done
===> Returning to build of scilab-5.3.3_9
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by scilab-5.3.3_9 for building
===> Extracting for scilab-5.3.3_9
=> SHA256 Checksum OK for scilab-5.3.3-src.tar.gz.
=> SHA256 Checksum OK for saxon6-5-5.zip.
=> SHA256 Checksum OK for jgraphx-1_4_1_0.jar.
Archive: /portdistfiles/saxon6-5-5.zip
inflating: /wrkdirs/usr/ports/math/scilab/work/scilab-5.3.3/thirdparty/saxon.jar
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for scilab-5.3.3_9
===> Applying extra patch /usr/ports/math/scilab/files/extra-patch-bin-JAVA_HOME
===> Applying FreeBSD patches for scilab-5.3.3_9
===========================================================================
=======================<phase: build-depends >============================
===> scilab-5.3.3_9 depends on file: /usr/local/share/java/classes/flexdock.jar - not found
===> Verifying install for /usr/local/share/java/classes/flexdock.jar in /usr/ports/devel/flexdock
===> Installing existing package /packages/All/flexdock-1.2.4.txz
Installing flexdock-1.2.4...Installing openjdk-7.60.19_1,1...Installing alsa-lib-1.0.27.2_2... done
Installing dejavu-2.34_3... done
Installing freetype2-2.5.3_2... done
Installing java-zoneinfo-2014.e... done
Installing javavmwrapper-2.5... done
Installing libX11-1.6.2_2,1...Installing kbproto-1.0.6... done
Installing libXau-1.0.8_2...Installing xproto-7.0.25... done
done
Installing libXdmcp-1.1.1_2... done
Installing libxcb-1.10_2...Installing libpthread-stubs-0.3_5... done
Installing libxml2-2.9.1_1...Installing libiconv-1.14_3... done
done
done
done
Installing libXext-1.3.2_2,1...Installing xextproto-7.3.0... done
done
Installing libXi-1.7.2_2,1...Installing inputproto-2.3... done
Installing libXfixes-5.0.1_2...Installing fixesproto-5.0... done
done
done
Installing libXrender-0.9.8_2...Installing renderproto-0.11.1... done
done
Installing libXt-1.1.4_2,1...Installing libSM-1.2.2_2,1...Installing libICE-1.0.8_2,1... done
done
done
Installing libXtst-1.2.2_2...Installing recordproto-1.14.2... done
<snip>
done
done
done
Installing docbook-xml-5.0_2...Installing xmlcharent-0.3_2... done
done
Installing sdocbook-xml-1.1_1,2... done
done
done
The following catalogs are installed:
1) /usr/local/share/sgml/catalog
The top level catalog for SGML stuff. It is not changed
by any ports/packages except textproc/xmlcatmgr.
2) /usr/local/share/sgml/catalog.ports
This catalog is for handling SGML stuff installed under
/usr/local/share/sgml. It is changed by ports/packages.
3) /usr/local/share/xml/catalog
The top level catalog for XML stuff. It is not changed
by any ports/packages except textproc/xmlcatmgr.
4) /usr/local/share/xml/catalog.ports
This catalog is for handling XML stuff installed under
/usr/local/share/xml. It is changed by ports/packages.
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on executable: xsltproc - not found
===> Verifying install for xsltproc in /usr/ports/textproc/libxslt
===> Installing existing package /packages/All/libxslt-1.1.28_3.txz
Installing libxslt-1.1.28_3...Installing libgcrypt-1.5.3_3...Installing indexinfo-0.2... done
Installing libgpg-error-1.13_1...Installing gettext-0.18.3.1_1... done
done
done
done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on file: /usr/local/share/java/classes/commons-beanutils.jar - not found
===> Verifying install for /usr/local/share/java/classes/commons-beanutils.jar in /usr/ports/java/jakarta-commons-beanutils
===> Installing existing package /packages/All/jakarta-commons-beanutils-1.9.2.txz
Installing jakarta-commons-beanutils-1.9.2...Installing jakarta-commons-collections-3.2.1... done
done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on executable: ant - not found
===> Verifying install for ant in /usr/ports/devel/apache-ant
===> Installing existing package /packages/All/apache-ant-1.9.3.txz
Installing apache-ant-1.9.3... done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on executable: swig - not found
===> Verifying install for swig in /usr/ports/devel/swig13
===> Installing existing package /packages/All/swig13-1.3.40.txz
Installing swig13-1.3.40... done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on file: /usr/local/openjdk7/bin/java - found
===> scilab-5.3.3_9 depends on executable: gfortran47 - not found
===> Verifying install for gfortran47 in /usr/ports/lang/gcc
===> Installing existing package /packages/All/gcc-4.7.3_1.txz
Installing gcc-4.7.3_1...Installing binutils-2.24... done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3_2... done
Installing mpc-1.0.2...Installing mpfr-3.1.2_2... done
done
done
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc47
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on executable: gmake - not found
===> Verifying install for gmake in /usr/ports/devel/gmake
===> Installing existing package /packages/All/gmake-3.82_1.txz
Installing gmake-3.82_1... done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on executable: pkgconf - not found
===> Verifying install for pkgconf in /usr/ports/devel/pkgconf
===> Installing existing package /packages/All/pkgconf-0.9.6.txz
Installing pkgconf-0.9.6... done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on file: /usr/local/bin/as - found
===> scilab-5.3.3_9 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===========================================================================
=======================<phase: lib-depends >============================
===> scilab-5.3.3_9 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so.2.9.1)
===> scilab-5.3.3_9 depends on shared library: libpcre.so - not found
===> Verifying for libpcre.so in /usr/ports/devel/pcre
===> Installing existing package /packages/All/pcre-8.34_1.txz
Installing pcre-8.34_1... done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on shared library: liblapack.so - not found
===> Verifying for liblapack.so in /usr/ports/math/lapack
===> Installing existing package /packages/All/lapack-3.4.2_2.txz
Installing lapack-3.4.2_2...Installing blas-3.4.2_2... done
done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so.2)
===> scilab-5.3.3_9 depends on shared library: libfftw3.so - not found
===> Verifying for libfftw3.so in /usr/ports/math/fftw3
===> Installing existing package /packages/All/fftw3-3.3.3_1.txz
Installing fftw3-3.3.3_1... done
===> Returning to build of scilab-5.3.3_9
===> scilab-5.3.3_9 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so.9)
===========================================================================
=======================<phase: configure >============================
===> Configuring for scilab-5.3.3_9
configure: loading site script /usr/ports/Templates/config.site
checking whether ln -s works... yes
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
ac: no
checking for _LARGEFILE64_SOURCE value needed for large files... unknown
checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel
checking build system type... i386-portbld-freebsd8.4
checking host system type... i386-portbld-freebsd8.4
checking for ld used by GCC... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking for shared library path variable... LD_LIBRARY_PATH
checking whether to activate relocatable installation... no
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for shared library run path origin... done
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking for style of include used by gmake... GNU
checking dependency style of cc... gcc3
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking pkg-config is at least version 0.9.0... yes
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran47 accepts -g... yes
checking if gfortran47 is a fortran 90 compatible compiler... yes
checking size of int... 4
checking size of long... 4
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking whether cc understands -c and -o together... yes
checking whether gfortran47 understands -c and -o together... yes
checking for nm... /usr/local/bin/nm
checking for leading underscores with Fortran (name-mangling scheme)... no
checking for trailing underscores with Fortran (name-mangling scheme)... yes
checking use of the sharpsign in CPP... yes
Define C2F with Trailing Underscore and Sharp Sign
checking for clock_gettime in -lrt... yes
Use JDK path specified (/usr/local/openjdk7)
checking JAVA_HOME variable... not defined
checking for zip or jar files to include on CLASSPATH...
checking to see if the java compiler works... yes
Using JAVAC=/usr/local/openjdk7/bin/javac
Java found in /usr/local/openjdk7
checking type of jvm... jdk
checking java API version... 1.6
Using the following JNI include flags -I/usr/local/openjdk7/include -I/usr/local/openjdk7/include/freebsd
checking if jni.h can be included... yes
Looking for JNI libs with i386 as machine hardware name
Looking for /usr/local/openjdk7/jre/lib/i386/libjava.so
Found /usr/local/openjdk7/jre/lib/i386/libjava.so
Using the following JNI library flags -L/usr/local/openjdk7/jre/lib/i386 -ljava -lverify -L/usr/local/openjdk7/jre/lib/i386/client -ljvm -L/usr/local/openjdk7/jre/lib/i386/native_threads -lhpi
Using the following runtime library path /usr/local/openjdk7/jre/lib/i386:/usr/local/openjdk7/jre/lib/i386/client:/usr/local/openjdk7/jre/lib/i386/native_threads
checking to see if we can link a JNI application... no
configure: error: could not link file that includes jni.h
Either the configure script does not know how to deal with
this JVM configuration or the JVM install is broken or corrupted.
===> Script "configure" failed unexpectedly.
Please report the problem to makc at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/math/scilab/work/scilab-5.3.3/config.log" including the
output of the failure of your make command. Also, it might be a good idea to
provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop in /usr/ports/math/scilab.
===> Cleaning for scilab-5.3.3_9
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