[REL - head-i386-default][science/mpqc] Failed for mpqc-2.3.1_17 in build

pkg-fallout-builder at FreeBSD.org pkg-fallout-builder at FreeBSD.org
Fri Feb 28 20:38:45 UTC 2014


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     maho at FreeBSD.org
Last committer: tijl at FreeBSD.org
Ident:          $FreeBSD: head/science/mpqc/Makefile 344614 2014-02-16 17:15:31Z tijl $
Log URL:        http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-02-28_18h40m32s/logs/mpqc-2.3.1_17.log
Build URL:      http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-02-28_18h40m32s
Log:

====>> Building science/mpqc
build started at Fri Feb 28 20:11:28 UTC 2014
port directory: /usr/ports/science/mpqc
building for: FreeBSD head-i386-default-job-01 11.0-CURRENT FreeBSD 11.0-CURRENT r261447 i386
maintained by: maho at FreeBSD.org
Makefile ident:      $FreeBSD: head/science/mpqc/Makefile 344614 2014-02-16 17:15:31Z tijl $
Poudriere version: 3.1-pre

---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1100007
UNAME_v=FreeBSD 11.0-CURRENT r261447
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref
PKG_EXT=txz
tpid=81023
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=mpqc-2.3.1_17
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/var/crash
MASTERNAME=head-i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for mpqc-2.3.1_17:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--with-cc=cc  --with-cxx=c++  --with-f77=gfortran46  --with-libdirs=-L/usr/local/lib  --with-blas="-lblas"  --with-lapack="-llapack"  --with-coptflags="-O2 -pipe -fno-strict-aliasing"  --with-cxxoptflags="-O2 -pipe -fno-strict-aliasing"  --with-f77optflags="-O -Wl,-rpath=/usr/local/lib/gcc46"  --enable-shared  --with-sc-datadir=/usr/local/share/mpqc/2.3.1 --with-include="-I/wrkdirs/usr/ports/science/mpqc/work -I/usr/local/include" --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc46" MAKE=gmake TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings"  AUTOCONF=/usr/local/bin/autoconf-2.69  AUTOCONF_DIR=/usr/local/share/autoconf-2.69  AUTOHEADER=/usr/local/bin/autoheader-2.69  AUTOIFNAMES=/usr/local/bin/ifnames-2.69  AUTOM4TE=/usr/local/bin/autom4te-2.69  AUTORECONF=/usr/local/bin/autoreconf-2.69  AUTOSCAN=/usr/local/bin/autoscan-2.69  AUTOUPDATE=/usr/local/bin/autoupdate-2.69  AUTOCONF_VERSION=2.69  CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=2
 62144
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc46" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings"  AUTOCONF=/usr/local/bin/autoconf-2.69  AUTOCONF_DIR=/usr/local/share/autoconf-2.69  AUTOHEADER=/usr/local/bin/autoheader-2.69  AUTOIFNAMES=/usr/local/bin/ifnames-2.69  AUTOM4TE=/usr/local/bin/autom4te-2.69  AUTORECONF=/usr/local/bin/autoreconf-2.69  AUTOSCAN=/usr/local/bin/autoscan-2.69  AUTOUPDATE=/usr/local/bin/autoupdate-2.69  AUTOCONF_VERSION=2.69  PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -f
 no-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46  -L/usr/local/lib/gcc46"  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  -o root -g wheel -m 444"
--End MAKE_ENV--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/mpqc
DOCSDIR=/usr/local/share/doc/mpqc
EXAMPLESDIR=/usr/local/share/examples/mpqc
WWWDIR=/usr/local/www/mpqc
ETCDIR=/usr/local/etc/mpqc
--End SUB_LIST--

---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for mpqc-2.3.1_17
=======================<phase: check-config   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   mpqc-2.3.1_17 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.6.txz
Installing pkg-1.2.6... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of mpqc-2.3.1_17
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by mpqc-2.3.1_17 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by mpqc-2.3.1_17 for building
=> SHA256 Checksum OK for mpqc-2.3.1.tar.bz2.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by mpqc-2.3.1_17 for building
===>  Extracting for mpqc-2.3.1_17
=> SHA256 Checksum OK for mpqc-2.3.1.tar.bz2.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for mpqc-2.3.1_17
===>  Applying FreeBSD patches for mpqc-2.3.1_17
===========================================================================
=======================<phase: build-depends  >============================
===>   mpqc-2.3.1_17 depends on executable: gfortran46 - not found
===>    Verifying install for gfortran46 in /usr/ports/lang/gcc
===>   Installing existing package /packages/All/gcc-4.6.4.txz
Installing gcc-4.6.4...Installing binutils-2.24...Installing gettext-0.18.3.1... done
 done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3... done
Installing mpc-1.0.2...Installing mpfr-3.1.2... done
 done
 done
===>   Returning to build of mpqc-2.3.1_17
===>   mpqc-2.3.1_17 depends on executable: gmake - not found
===>    Verifying install for gmake in /usr/ports/devel/gmake
===>   Installing existing package /packages/All/gmake-3.82_1.txz
Installing gmake-3.82_1... done
===>   Returning to build of mpqc-2.3.1_17
===>   mpqc-2.3.1_17 depends on executable: doxygen - not found
===>    Verifying install for doxygen in /usr/ports/devel/doxygen
===>   Installing existing package /packages/All/doxygen-1.8.3.1_1.txz
Installing doxygen-1.8.3.1_1...Installing perl5-5.16.3_7... done
Installing png-1.5.18... done
 done
===>   Returning to build of mpqc-2.3.1_17
===>   mpqc-2.3.1_17 depends on executable: dot - not found
===>    Verifying install for dot in /usr/ports/graphics/graphviz
===>   Installing existing package /packages/All/graphviz-2.36.0.txz
Installing graphviz-2.36.0...Installing expat-2.1.0... done
Installing fontconfig-2.11.0_1,1...Installing freetype2-2.5.2... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
 done
Installing glib-2.36.3_2...Installing libffi-3.0.13_1... done
Installing libiconv-1.14_1... done
Installing pcre-8.34... done
Installing python27-2.7.6_2... done
No schema files found: doing nothing.
 done
Installing jpeg-8_4... done
Installing libICE-1.0.8,1...Installing xproto-7.0.25... done
 done
Installing libSM-1.2.2,1... done
Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
Installing libXau-1.0.8... done
Installing libXdmcp-1.1.1... done
Installing libxcb-1.9.3...Installing libpthread-stubs-0.3_4... done
Installing libxml2-2.8.0_3... done
 done
 done
Installing libXaw-1.0.12,2...Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done
 done
Installing libXmu-1.1.2,1...Installing libXt-1.1.4,1... done
 done
Installing libXp-1.0.2,1...Installing printproto-1.0.5... done
 done
Installing libXpm-3.5.11... done
 done
Installing libXrender-0.9.8...Installing renderproto-0.11.1... done
 done
Installing libgd-2.1.0_1,1...Installing tiff-4.0.3...Installing freeglut-2.8.1...Installing libGLU-9.0.0...Installing libGL-9.1.7...Installing dri2proto-2.8... done
Installing libXdamage-1.1.4...Installing damageproto-1.2.1... done
Installing libXfixes-5.0.1...Installing fixesproto-5.0... done
 done
 done
Installing libXxf86vm-1.1.3...Installing xf86vidmodeproto-2.3.1... done
 done
Installing libdrm-2.4.50...Installing libpciaccess-0.13.2...Installing pciids-20140222... done
 done
 done
 done
 done
Installing libXi-1.7.2,1...Installing inputproto-2.3... done
<snip>
Generating docs for compound sc::ParsedKeyVal...
Generating docs for compound sc::KeyValValue...
Generating docs for compound sc::KeyValValuedouble...
Generating docs for compound sc::KeyValValueboolean...
Generating docs for compound sc::KeyValValuefloat...
Generating docs for compound sc::KeyValValuechar...
Generating docs for compound sc::KeyValValueint...
Generating docs for compound sc::KeyValValuesize...
Generating docs for compound sc::KeyValValuepchar...
Generating docs for compound sc::KeyValValuestring...
Generating docs for compound sc::KeyValValueRefDescribedClass...
Generating docs for compound sc::KeyValValueString...
Generating docs for compound sc::auto_vec...
Generating docs for compound sc::Debugger...
Generating docs for compound sc::CCAEnv...
Generating docs for compound sc::Result...
Generating docs for compound sc::NCResult...
Generating docs for compound sc::AccResult...
Generating docs for compound sc::SSAccResult...
Generating docs for compound sc::NCAccResult...
Generating docs for compound sc::Compute...
Generating docs for compound sc::ResultInfo...
Generating docs for compound sc::AccResultInfo...
Generating docs for compound sc::ExEnv...
Generating docs for compound sc::SCFormIO...
Generating docs for compound sc::scprintf...
Generating docs for compound sc::TimedRegion...
Generating docs for compound sc::RegionTimer...
Generating docs for compound sc::Timer...
Generating docs for compound sc::Units...
Generating docs for compound sc::GetLongOpt...
Generating docs for compound sc::Identifier...
Generating docs for compound sc::Identity...
Generating docs for compound sc::RefCount...
Generating docs for compound sc::RefBase...
Generating docs for compound sc::Ref...
Generating docs for compound sc::X...
Generating docs for compound sc::Y...
Generating docs for compound sc::vec2...
Generating docs for compound sc::vec3...
Generating docs for compound sc::vec4...
Generating docs for compound sc::mat3...
Generating docs for compound sc::mat4...
Generating docs for compound sc::AnimatedObject...
Generating docs for compound sc::Appearance...
Generating docs for compound sc::Color...
Generating docs for compound sc::Material...
Generating docs for compound sc::RenderedObject...
Generating docs for compound sc::RenderedObjectSet...
Generating docs for compound sc::OOGLRender...
Generating docs for compound sc::Parameter...
Generating docs for compound sc::RenderedPolygons...
Generating docs for compound sc::RenderedPolylines...
Generating docs for compound sc::Render...
Generating docs for compound sc::FileRender...
Generating docs for compound sc::RenderedSphere...
Generating docs for compound sc::Stack...
Generating docs for compound sc::Transform...
Generating docs for compound sc::SavableStateProxy...
Generating docs for compound sc::SavableState...
Generating docs for compound sc::StateOutBin...
Generating docs for compound sc::StateInBin...
Generating docs for compound sc::StateOutFile...
Generating docs for compound sc::StateInFile...
Generating docs for compound sc::StateOutText...
Generating docs for compound sc::StateInText...
Generating docs for compound sc::StateInData...
Generating docs for compound sc::StateClassData...
Generating docs for compound sc::StateIn...
Generating docs for compound sc::StateOutData...
Generating docs for compound sc::StateOut...
Generating docs for compound sc::TranslateData...
Generating docs for compound sc::TranslateDataByteSwap...
Generating docs for compound sc::TranslateDataOut...
Generating docs for compound sc::TranslateDataIn...
Generating graph info page...
Generating directory documentation...
Generating dependency graph for directory basis
Generating dependency graph for directory bin
Generating dependency graph for directory cca
Generating dependency graph for directory chemistry
Generating dependency graph for directory cints
Generating dependency graph for directory class
Generating dependency graph for directory container
Generating dependency graph for directory dft
Generating dependency graph for directory group
Generating dependency graph for directory intcca
Generating dependency graph for directory intv3
Generating dependency graph for directory isosurf
Generating dependency graph for directory keyval
Generating dependency graph for directory lib
Generating dependency graph for directory libpsio
Generating dependency graph for directory math
Generating dependency graph for directory mbpt
Generating dependency graph for directory mbptr12
Generating dependency graph for directory misc
Generating dependency graph for directory molecule
Generating dependency graph for directory molrender
Generating dependency graph for directory mpqc
Generating dependency graph for directory oint3
Generating dependency graph for directory optimize
Generating dependency graph for directory options
Generating dependency graph for directory psi
Generating dependency graph for dilatex: not found
Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
dvips: not found
Problems running dvips. Check your installation!
Fatal error 'unlock error' at line 341 in file /usr/local/poudriere/jails/head-i386/usr/src/lib/libthr/thread/thr_umtx.c (errno = 0)
rectory psi3
Generating dependency graph for directory qc
Generating dependency graph for directory ref
Generating dependency graph for directory render
Generating dependency graph for directory scf
Generating dependency graph for directory scls
Generating dependency graph for directory scmat
Generating dependency graph for directory scpr
Generating dependency graph for directory solvent
Generating dependency graph for directory src
Generating dependency graph for directory state
Generating dependency graph for directory symmetry
Generating dependency graph for directory util
Generating dependency graph for directory wfn
Generating bitmaps for formulas in HTML...
Generating image form_0.png for formula
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating graphical class hierarchy...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
Generating dot graphs using 25 parallel threads...
Running dot for graph 1/1254
Running dot for graph 2/1254
Running dot for graph 3/1254
Running dot for graph 4/1254
Running dot for graph 5/1254
Running dot for graph 6/1254
Running dot for graph 7/1254
Running dot for graph 8/1254
Running dot for graph 9/1254
Running dot for graph 10/1254
Running dot for graph 11/1254
Running dot for graph 12/1254
Running dot for graph 13/1254
Running dot for graph 14/1254
Running dot for graph 15/1254
Running dot for graph 16/1254
Running dot for graph 17/1254
Running dot for graph 18/1254
Running dot for graph 19/1254
Running dot for graph 20/1254
Running dot for graph 21/1254
Running dot for graph 22/1254
Running dot for graph 23/1254
Running dot for graph 24/1254
Running dot for graph 25/1254
Running dot for graph 26/1254
Running dot for graph 27/1254
Running dot for graph 28/1254
Running dot for graph 29/1254
Running dot for graph 30/1254
Running dot for graph 31/1254
Running dot for graph 32/1254
Running dot for graph 33/1254
Running dot for graph 34/1254
Running dot for graph 35/1254
Running dot for graph 36/1254
Running dot for graph 37/1254
Running dot for graph 38/1254
Running dot for graph 39/1254
Running dot for graph 40/1254
Running dot for graph 41/1254
Running dot for graph 42/1254
Running dot for graph 43/1254
Running dot for graph 44/1254
Running dot for graph 45/1254
Running dot for graph 46/1254
Running dot for graph 47/1254
Running dot for graph 48/1254
Running dot for graph 49/1254
Running dot for graph 50/1254
Running dot for graph 51/1254
Running dot for graph 52/1254
Running dot for graph 53/1254
Running dot for graph 54/1254
gmake[1]: *** [html] Abort trap (core dumped)
gmake[1]: Leaving directory `/wrkdirs/usr/ports/science/mpqc/work/mpqc-2.3.1/doc'
*** Error code 2

Stop.
make: stopped in /usr/ports/science/mpqc
===>  Cleaning for mpqc-2.3.1_17


More information about the freebsd-pkg-fallout mailing list