[REL - 83amd64-default][science/mpqc-mpich] Failed for mpqc-mpich-2.3.1_17 in build
pkg-fallout-builder at FreeBSD.org
pkg-fallout-builder at FreeBSD.org
Wed Feb 26 13:45:42 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: maho at FreeBSD.org
Last committer: mat at FreeBSD.org
Ident: $FreeBSD: head/science/mpqc-mpich/Makefile 340722 2014-01-22 17:00:46Z mat $
Log URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-02-26_04h39m00s/logs/mpqc-mpich-2.3.1_17.log
Build URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-02-26_04h39m00s
Log:
====>> Building science/mpqc-mpich
build started at Wed Feb 26 13:27:46 UTC 2014
port directory: /usr/ports/science/mpqc-mpich
building for: FreeBSD 83amd64-default-job-21 8.3-RELEASE-p14 FreeBSD 8.3-RELEASE-p14 amd64
maintained by: maho at FreeBSD.org
Makefile ident: $FreeBSD: head/science/mpqc-mpich/Makefile 340722 2014-01-22 17:00:46Z mat $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=803000
UNAME_v=FreeBSD 8.3-RELEASE-p14
UNAME_r=8.3-RELEASE-p14
FTP_PASSIVE_MODE=YES
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/83amd64-default/ref
PKG_EXT=txz
tpid=13192
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=mpqc-mpich-2.3.1_17
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=83amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for mpqc-mpich-2.3.1_17:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--with-cc=cc --with-cxx=c++ --with-f77=gfortran46 --with-libdirs=-L/usr/local/lib --with-blas="-lblas" --with-lapack="-llapack" --with-coptflags="-O2 -pipe -fno-strict-aliasing" --with-cxxoptflags="-O2 -pipe -fno-strict-aliasing" --with-f77optflags="-O -Wl,-rpath=/usr/local/lib/gcc46" --enable-shared --with-sc-datadir=/usr/local/share/mpqc/2.3.1 --with-libdirs="-L/usr/local/lib -L/usr/local/lib" --enable-always-use-mpi --with-include="-I/usr/local/include -I/wrkdirs/usr/ports/science/mpqc-mpich/work -I/usr/local/include" --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc46" MAKE=gmake PTHREAD_LIBS="-pthread" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" AUTOCONF=/usr/local/bin/autoconf-2.69 AUTOCONF_DIR=/usr/local/share/autoconf-2.69 AUTOHEADER=/usr/local/bin/autoheader-2.69 AUTOIFNAMES=/usr/local/bin/ifnames-2.69 AUTOM4TE=/usr/local/bin/autom4te-2.69 AUTORECONF=/usr/local/bin/autoreconf-2.69 AUTOSCAN=/usr/local/bin/autoscan-2.69 AUTOUPDATE=/usr/local/bin/autoupdate-2.69 AUTOCONF_VERSION=2.69 CONFIG_SITE=/usr/ports/Templates/config.site
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc46" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" AUTOCONF=/usr/local/bin/autoconf-2.69 AUTOCONF_DIR=/usr/local/share/autoconf-2.69 AUTOHEADER=/usr/local/bin/autoheader-2.69 AUTOIFNAMES=/usr/local/bin/ifnames-2.69 AUTOM4TE=/usr/local/bin/autom4te-2.69 AUTORECONF=/usr/local/bin/autoreconf-2.69 AUTOSCAN=/usr/local/bin/autoscan-2.69 AUTOUPDATE=/usr/local/bin/autoupdate-2.69 AUTOCONF_VERSION=2.69 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -f
no-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46 -L/usr/local/lib/gcc46" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/mpqc
DOCSDIR=/usr/local/share/doc/mpqc
EXAMPLESDIR=/usr/local/share/examples/mpqc
WWWDIR=/usr/local/www/mpqc
ETCDIR=/usr/local/etc/mpqc
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for mpqc-mpich-2.3.1_17
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> mpqc-mpich-2.3.1_17 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.6.txz
Installing pkg-1.2.6... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of mpqc-mpich-2.3.1_17
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by mpqc-mpich-2.3.1_17 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by mpqc-mpich-2.3.1_17 for building
=> SHA256 Checksum OK for mpqc-2.3.1.tar.bz2.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by mpqc-mpich-2.3.1_17 for building
===> Extracting for mpqc-mpich-2.3.1_17
=> SHA256 Checksum OK for mpqc-2.3.1.tar.bz2.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for mpqc-mpich-2.3.1_17
===> Applying FreeBSD patches for mpqc-mpich-2.3.1_17
===========================================================================
=======================<phase: build-depends >============================
===> mpqc-mpich-2.3.1_17 depends on executable: gfortran46 - not found
===> Verifying install for gfortran46 in /usr/ports/lang/gcc
===> Installing existing package /packages/All/gcc-4.6.4.txz
Installing gcc-4.6.4...Installing binutils-2.24...Installing gettext-0.18.3.1...Installing libiconv-1.14_1... done
done
done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3... done
Installing mpc-1.0.2...Installing mpfr-3.1.2... done
done
done
===> Returning to build of mpqc-mpich-2.3.1_17
===> mpqc-mpich-2.3.1_17 depends on executable: gmake - not found
===> Verifying install for gmake in /usr/ports/devel/gmake
===> Installing existing package /packages/All/gmake-3.82_1.txz
Installing gmake-3.82_1... done
===> Returning to build of mpqc-mpich-2.3.1_17
===> mpqc-mpich-2.3.1_17 depends on executable: doxygen - not found
===> Verifying install for doxygen in /usr/ports/devel/doxygen
===> Installing existing package /packages/All/doxygen-1.8.3.1_1.txz
Installing doxygen-1.8.3.1_1...Installing perl5-5.16.3_7... done
Installing png-1.5.18... done
done
===> Returning to build of mpqc-mpich-2.3.1_17
===> mpqc-mpich-2.3.1_17 depends on executable: dot - not found
===> Verifying install for dot in /usr/ports/graphics/graphviz
===> Installing existing package /packages/All/graphviz-2.36.0.txz
Installing graphviz-2.36.0...Installing expat-2.1.0... done
Installing fontconfig-2.11.0_1,1...Installing freetype2-2.5.2... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
done
Installing glib-2.36.3_2...Installing libffi-3.0.13_1... done
Installing pcre-8.34... done
Installing python27-2.7.6_2... done
No schema files found: doing nothing.
done
Installing jpeg-8_4... done
Installing libICE-1.0.8,1...Installing xproto-7.0.25... done
done
Installing libSM-1.2.2,1... done
Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
Installing libXau-1.0.8... done
Installing libXdmcp-1.1.1... done
Installing libpthread-stubs-0.3_4... done
Installing libxcb-1.9.3...Installing libxml2-2.8.0_3... done
done
done
Installing libXaw-1.0.12,2...Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done
done
Installing libXmu-1.1.2,1...Installing libXt-1.1.4,1... done
done
Installing libXp-1.0.2,1...Installing printproto-1.0.5... done
done
Installing libXpm-3.5.11... done
done
Installing libXrender-0.9.8...Installing renderproto-0.11.1... done
done
Installing libgd-2.1.0_1,1...Installing tiff-4.0.3...Installing freeglut-2.8.1...Installing libGLU-9.0.0...Installing libGL-7.6.1_4...Installing dri2proto-2.8... done
Installing libXdamage-1.1.4...Installing damageproto-1.2.1... done
Installing fixesproto-5.0... done
Installing libXfixes-5.0.1... done
done
Installing libXxf86vm-1.1.3...Installing xf86vidmodeproto-2.3.1... done
done
Installing libdrm-2.4.17_1...Installing libpciaccess-0.13.2...Installing pciids-20140222... done
done
done
done
done
Installing libXi-1.7.2,1...Installing inputproto-2.3... done
done
Installing libXrandr-1.4.2...Installing randrproto-1.4.0... done
done
done
<snip>
Generating docs for compound sc::ProcMemoryGrp...
Generating docs for compound sc::RDMAMemoryGrp...
Generating docs for compound sc::ShmMemoryGrp...
Generating docs for compound sc::GrpReduce...
Generating docs for compound sc::GrpSumReduce...
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Generating docs for compound sc::GrpMaxReduce...
Generating docs for compound sc::GrpArithmeticAndReduce...
Generating docs for compound sc::GrpArithmeticOrReduce...
Generating docs for compound sc::GrpArithmeticXOrReduce...
Generating docs for compound sc::GrpProductReduce...
Generating docs for compound sc::GrpFunctionReduce...
Generating docs for compound sc::MessageGrp...
Generating docs for compound sc::message_struct...
Generating docs for compound sc::ProcMessageGrp...
Generating docs for compound sc::intMessageGrp...
Generating docs for compound sc::MPIMessageGrp...
Generating docs for compound sc::commbuf_struct...
Generating docs for compound sc::msgbuf_struct...
Generating docs for compound sc::ShmMessageGrp...
Generating docs for compound sc::MsgStateSend...
Generating docs for compound sc::MsgStateBufRecv...
Generating docs for compound sc::MsgStateRecv...
Generating docs for compound sc::StateSend...
Generating docs for compound sc::StateRecv...
Generating docs for compound sc::BcastStateSend...
Generating docs for compound sc::BcastStateRecv...
Generating docs for compound sc::BcastState...
Generating docs for compound sc::BcastStateInBin...
Generating docs for compound sc::FreeData...
Generating docs for compound sc::UsedData...
Generating docs for compound sc::PoolData...
Generating docs for compound sc::Pool...
Generating docs for compound sc::ParallelRegionTimer...
Generating docs for compound sc::RangeLockItem...
Generating docs for compound sc::RangeLock...
Generating docs for compound sc::PthreadThreadGrp...
Generating docs for compound sc::PumaThreadGrp...
Generating docs for compound sc::ThreadLock...
Generating docs for compound sc::ThreadLockHolder...
Generating docs for compound sc::Thread...
Generating docs for compound sc::ThreadGrp...
Generating docs for compound sc::ProcThreadGrp...
Generating docs for compound sc::GlobalMsgIter...
Generating docs for compound sc::MachineTopology...
Generating docs for compound sc::intlist_struct...
Generating docs for compound sc::ip_keyword_tree_struct...
Generating docs for compound sc::ip_keyword_tree_list_struct...
Generating docs for compound sc::ip_cwk_stack_struct...
Generating docs for compound sc::IPV2...
Generating docs for compound sc::ip_string_list_struct...
Generating docs for compound sc::KeyVal...
Generating docs for compound sc::AssignedKeyVal...
Generating docs for compound sc::StringKeyVal...
Generating docs for compound sc::AggregateKeyVal...
Generating docs for compound sc::PrefixKeyVal...
Generating docs for compound sc::ParsedKlatex: not found
Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
dvips: not found
Problems running dvips. Check your installation!
Fatal error 'mutex is on list' at line 427 in file /usr/src/lib/libthr/thread/thr_mutex.c (errno = 0)
eyVal...
Generating docs for compound sc::KeyValValue...
Generating docs for compound sc::KeyValValuedouble...
Generating docs for compound sc::KeyValValueboolean...
Generating docs for compound sc::KeyValValuefloat...
Generating docs for compound sc::KeyValValuechar...
Generating docs for compound sc::KeyValValueint...
Generating docs for compound sc::KeyValValuesize...
Generating docs for compound sc::KeyValValuepchar...
Generating docs for compound sc::KeyValValuestring...
Generating docs for compound sc::KeyValValueRefDescribedClass...
Generating docs for compound sc::KeyValValueString...
Generating docs for compound sc::auto_vec...
Generating docs for compound sc::Debugger...
Generating docs for compound sc::CCAEnv...
Generating docs for compound sc::Result...
Generating docs for compound sc::NCResult...
Generating docs for compound sc::AccResult...
Generating docs for compound sc::SSAccResult...
Generating docs for compound sc::NCAccResult...
Generating docs for compound sc::Compute...
Generating docs for compound sc::ResultInfo...
Generating docs for compound sc::AccResultInfo...
Generating docs for compound sc::ExEnv...
Generating docs for compound sc::SCFormIO...
Generating docs for compound sc::scprintf...
Generating docs for compound sc::TimedRegion...
Generating docs for compound sc::RegionTimer...
Generating docs for compound sc::Timer...
Generating docs for compound sc::Units...
Generating docs for compound sc::GetLongOpt...
Generating docs for compound sc::Identifier...
Generating docs for compound sc::Identity...
Generating docs for compound sc::RefCount...
Generating docs for compound sc::RefBase...
Generating docs for compound sc::Ref...
Generating docs for compound sc::X...
Generating docs for compound sc::Y...
Generating docs for compound sc::vec2...
Generating docs for compound sc::vec3...
Generating docs for compound sc::vec4...
Generating docs for compound sc::mat3...
Generating docs for compound sc::mat4...
Generating docs for compound sc::AnimatedObject...
Generating docs for compound sc::Appearance...
Generating docs for compound sc::Color...
Generating docs for compound sc::Material...
Generating docs for compound sc::RenderedObject...
Generating docs for compound sc::RenderedObjectSet...
Generating docs for compound sc::OOGLRender...
Generating docs for compound sc::Parameter...
Generating docs for compound sc::RenderedPolygons...
Generating docs for compound sc::RenderedPolylines...
Generating docs for compound sc::Render...
Generating docs for compound sc::FileRender...
Generating docs for compound sc::RenderedSphere...
Generating docs for compound sc::Stack...
Generating docs for compound sc::Transform...
Generating docs for compound sc::SavableStateProxy...
Generating docs for compound sc::SavableState...
Generating docs for compound sc::StateOutBin...
Generating docs for compound sc::StateInBin...
Generating docs for compound sc::StateOutFile...
Generating docs for compound sc::StateInFile...
Generating docs for compound sc::StateOutText...
Generating docs for compound sc::StateInText...
Generating docs for compound sc::StateInData...
Generating docs for compound sc::StateClassData...
Generating docs for compound sc::StateIn...
Generating docs for compound sc::StateOutData...
Generating docs for compound sc::StateOut...
Generating docs for compound sc::TranslateData...
Generating docs for compound sc::TranslateDataByteSwap...
Generating docs for compound sc::TranslateDataOut...
Generating docs for compound sc::TranslateDataIn...
Generating graph info page...
Generating directory documentation...
Generating dependency graph for directory basis
Generating dependency graph for directory bin
Generating dependency graph for directory cca
Generating dependency graph for directory chemistry
Generating dependency graph for directory cints
Generating dependency graph for directory class
Generating dependency graph for directory container
Generating dependency graph for directory dft
Generating dependency graph for directory group
Generating dependency graph for directory intcca
Generating dependency graph for directory intv3
Generating dependency graph for directory isosurf
Generating dependency graph for directory keyval
Generating dependency graph for directory lib
Generating dependency graph for directory libpsio
Generating dependency graph for directory math
Generating dependency graph for directory mbpt
Generating dependency graph for directory mbptr12
Generating dependency graph for directory misc
Generating dependency graph for directory molecule
Generating dependency graph for directory molrender
Generating dependency graph for directory mpqc
Generating dependency graph for directory oint3
Generating dependency graph for directory optimize
Generating dependency graph for directory options
Generating dependency graph for directory psi
Generating dependency graph for directory psi3
Generating dependency graph for directory qc
Generating dependency graph for directory ref
Generating dependency graph for directory render
Generating dependency graph for directory scf
Generating dependency graph for directory scls
Generating dependency graph for directory scmat
Generating dependency graph for directory scpr
Generating dependency graph for directory solvent
Generating dependency graph for directory src
Generating dependency graph for directory state
Generating dependency graph for directory symmetry
Generating dependency graph for directory util
Generating dependency graph for directory wfn
Generating bitmaps for formulas in HTML...
Generating image form_0.png for formula
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating graphical class hierarchy...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
Generating dot graphs using 25 parallel threads...
gmake: *** [html] Abort trap: 6 (core dumped)
*** Error code 2
Stop in /usr/ports/science/mpqc-mpich.
===> Cleaning for mpqc-mpich-2.3.1_17
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