[REL - 10amd64-default][science/jmol] Failed for jmol-13.2.3 in build
pkg-fallout-builder at FreeBSD.org
pkg-fallout-builder at FreeBSD.org
Thu Feb 13 19:26:40 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: pawel at FreeBSD.org
Ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $
Log URL: http://beefy2.isc.freebsd.org/bulk/10amd64-default/2014-02-13_13h36m58s/logs/jmol-13.2.3.log
Build URL: http://beefy2.isc.freebsd.org/bulk/10amd64-default/2014-02-13_13h36m58s
Log:
====>> Building science/jmol
build started at Thu Feb 13 19:17:28 UTC 2014
port directory: /usr/ports/science/jmol
building for: FreeBSD 10amd64-default-job-17 10.0-RELEASE FreeBSD 10.0-RELEASE amd64
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=1000510
UNAME_v=FreeBSD 10.0-RELEASE
UNAME_r=10.0-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/10amd64-default/ref
PKG_EXT=txz
tpid=81166
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=jmol-13.2.3
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=10amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for jmol-13.2.3:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk7 SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"
JAVAJARDIR="/usr/local/share/java/classes"
JAVALIBDIR="/usr/local/share/java/classes"
JAVA_VERSION="1.7+"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/jmol
DOCSDIR=/usr/local/share/doc/jmol
EXAMPLESDIR=/usr/local/share/examples/jmol
WWWDIR=/usr/local/www/jmol
ETCDIR=/usr/local/etc/jmol
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for jmol-13.2.3
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> jmol-13.2.3 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.6.txz
Installing pkg-1.2.6... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of jmol-13.2.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by jmol-13.2.3 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by jmol-13.2.3 for building
=> SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz.
=> SHA256 Checksum OK for selfSignedCertificate.cer.
=> SHA256 Checksum OK for selfSignedCertificate.store.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by jmol-13.2.3 for building
===> Extracting for jmol-13.2.3
=> SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz.
=> SHA256 Checksum OK for selfSignedCertificate.cer.
=> SHA256 Checksum OK for selfSignedCertificate.store.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for jmol-13.2.3
===========================================================================
=======================<phase: build-depends >============================
===> jmol-13.2.3 depends on file: /usr/local/openjdk7/bin/java - not found
===> Verifying install for /usr/local/openjdk7/bin/java in /usr/ports/java/openjdk7
===> Installing existing package /packages/All/openjdk-7.51.13,1.txz
Installing openjdk-7.51.13,1...Installing libXtst-1.2.2...Installing fixesproto-5.0... done
Installing inputproto-2.3... done
Installing kbproto-1.0.6... done
Installing libX11-1.6.2,1...Installing libXau-1.0.8...Installing xproto-7.0.25... done
done
Installing libXdmcp-1.1.1... done
Installing libpthread-stubs-0.3_4... done
Installing libxcb-1.9.3...Installing libxml2-2.8.0_3... done
done
done
Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done
done
Installing libXfixes-5.0.1... done
Installing libXi-1.7.2,1... done
Installing recordproto-1.14.2... done
done
Installing libXrender-0.9.8...Installing renderproto-0.11.1... done
done
Installing libXt-1.1.4,1...Installing libICE-1.0.8,1... done
Installing libSM-1.2.2,1... done
done
Installing dejavu-2.34...Installing fontconfig-2.11.0_1,1...Installing expat-2.1.0... done
Installing freetype2-2.5.2... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
done
done
Installing compat9x-amd64-9.2.902000.201310... done
Installing gcc-4.6.4...Installing binutils-2.24...Installing gettext-0.18.3.1... done
done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3... done
Installing mpc-1.0.2...Installing mpfr-3.1.2... done
done
done
Installing javavmwrapper-2.4_3... done
Installing java-zoneinfo-2013.i... done
Installing alsa-lib-1.0.27.2_1... done
done
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/lib/X11/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===> Returning to build of jmol-13.2.3
===> jmol-13.2.3 depends on file: /usr/local/bin/ant - not found
===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant
===> Installing existing package /packages/All/apache-ant-1.9.3.txz
Installing apache-ant-1.9.3...Installing openjdk6-b30,1...Installing libXpm-3.5.11... done
Installing open-motif-2.3.4...Installing xbitmaps-1.1.1... done
Installing libXp-1.0.2,1...Installing printproto-1.0.5... done
done
Installing libXmu-1.1.2,1... done
Installing libXaw-1.0.12,2... done
Installing libXft-2.3.1... done
Installing png-1.5.17... done
Installing jpeg-8_4... done
done
done
done
<snip>
[echo] Updating messages_sr.class file for Jmol ...
[exec] 2 translated messages, 427 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_sv.class file for Jmol ...
[exec] 427 translated messages, 1 fuzzy translation, 1 untranslated message.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_ta.class file for Jmol ...
[exec] 82 translated messages, 1 fuzzy translation, 346 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_te.class file for Jmol ...
[exec] 16 translated messages, 1 fuzzy translation, 412 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_tr.class file for Jmol ...
[exec] 340 translated messages, 1 fuzzy translation, 88 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_ug.class file for Jmol ...
[exec] 92 translated messages, 337 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_uk.class file for Jmol ...
[exec] 427 translated messages, 1 fuzzy translation, 1 untranslated message.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_uz.class file for Jmol ...
[exec] 87 translated messages, 1 fuzzy translation, 341 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_zh_CN.class file for Jmol ...
[exec] 419 translated messages, 1 fuzzy translation, 9 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_zh_TW.class file for Jmol ...
[exec] 376 translated messages, 1 fuzzy translation, 52 untranslated messages.
update-applet-catalog:
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_ar.class file for JmolApplet ...
[exec] 188 translated messages, 1 fuzzy translation, 358 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_bs.class file for JmolApplet ...
[exec] 8 translated messages, 539 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_ca.class file for JmolApplet ...
[exec] 543 translated messages, 4 fuzzy translations.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_cs.class file for JmolApplet ...
[exec] 543 translated messages, 4 fuzzy translations.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_da.class file for JmolApplet ...
[exec] 543 translated messages, 4 fuzzy translations.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_de.class file for JmolApplet ...
[exec] 542 translated messages, 4 fuzzy translations, 1 untranslated message.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_el.class file for JmolApplet ...
[exec] 261 translated messages, 2 fuzzy translations, 284 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_en_GB.class file for JmolApplet ...
[exec] 543 translated messages, 4 fuzzy translations.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_es.class file for JmolApplet ...
[exec] 543 translated messages, 4 fuzzy translations.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_et.class file for JmolApplet ...
[exec] 117 translated messages, 1 fuzzy translation, 429 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_eu.class file for JmolApplet ...
[exec] 479 translated messages, 4 fuzzy translations, 64 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_fi.class file for JmolApplet ...
[exec] 531 translated messages, 4 fuzzy translations, 12 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_fr.class file for JmolApplet ...
[exec] 543 translated messages, 4 fuzzy translations.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_fy.class file for JmolApplet ...
[exec] 1 translated message, 546 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_hu.class file for JmolApplet ...
[exec] 409 translated messages, 3 fuzzy translations, 135 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_hy.class file for JmolApplet ...
[exec] 59 translated messages, 488 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_id.class file for JmolApplet ...
[exec] 542 translated messages, 4 fuzzy translations, 1 untranslated message.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_it.class file for JmolApplet ...
[exec] 539 translated messages, 4 fuzzy translations, 4 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_ja.class file for JmolApplet ...
[exec] 535 translated messages, 4 fuzzy translations, 8 untranslated messages.
check-uptodate-applet-catalog:
update-applet-catalog-lang:
[echo] Updating messages_jv.class file for JmolApplet ...
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x0000000801cf93c5, pid=16842, tid=34414183424
#
# JRE version: OpenJDK Runtime Environment (7.0-b13) (build 1.7.0_51-b13)
# Java VM: OpenJDK 64-Bit Server VM (24.51-b03 mixed mode bsd-amd64 compressed oops)
# Problematic frame:
# V [libjvm.so+0x4f93c5] AsyncGetCallTrace+0x3dbc5
#
# Core dump written. Default location: /cores/core or core.16842
#
# An error report file with more information is saved as:
# /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/hs_err_pid16842.log
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
#
*** Signal 6
Stop.
make: stopped in /usr/ports/science/jmol
===> Cleaning for jmol-13.2.3
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