[REL - head-amd64-default][biology/ugene] Failed for ugene-1.12.3 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sun Dec 1 04:06:05 UTC 2013
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: h2+fbsdports at fsfe.org
Last committer: danfe at FreeBSD.org
Ident: $FreeBSD: head/biology/ugene/Makefile 332391 2013-11-01 15:20:28Z danfe $
Log URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-11-30_09h43m08s/logs/ugene-1.12.3.log
Build URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-11-30_09h43m08s
Log:
====>> Building biology/ugene
build started at Sun Dec 1 02:49:12 UTC 2013
port directory: /usr/ports/biology/ugene
building for: FreeBSD head-amd64-default-job-22 11.0-CURRENT FreeBSD 11.0-CURRENT r256430 amd64
maintained by: h2+fbsdports at fsfe.org
Makefile ident: $FreeBSD: head/biology/ugene/Makefile 332391 2013-11-01 15:20:28Z danfe $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=1100000
UNAME_v=FreeBSD 11.0-CURRENT r256430
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref
PKG_EXT=txz
tpid=86305
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=ugene-1.12.3
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=head-amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for ugene-1.12.3:
DOCS=on: Install official UGENE documentation (PDF)
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt4 --with-qt-libraries=/usr/local/lib/qt4 --with-extra-libs=/usr/local/lib --with-extra-includes=/usr/local/include
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" MOC="/usr/local/bin/moc-qt4" UIC="/usr/local/bin/uic-qt4" LIBS="" QMAKE="/usr/local/bin/qmake-qt4" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-clang" QTDIR="/usr/local" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-clang" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -std=c++11" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/ugene
DOCSDIR=/usr/local/share/ugene/manuals
EXAMPLESDIR=/usr/local/share/examples/ugene
WWWDIR=/usr/local/www/ugene
ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for ugene-1.12.3
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> ugene-1.12.3 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.1.txz
Installing pkg-1.2.1... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of ugene-1.12.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.12.3 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.12.3 for building
=> SHA256 Checksum OK for ugene/ugene-1.12.3.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.12.3 for building
===> Extracting for ugene-1.12.3
=> SHA256 Checksum OK for ugene/ugene-1.12.3.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
/bin/cp -p /portdistfiles/ugene/*.pdf /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3/data/manuals
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ugene-1.12.3
===> Applying FreeBSD patches for ugene-1.12.3
===========================================================================
=======================<phase: build-depends >============================
===> ugene-1.12.3 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in /usr/ports/x11/glproto
===> Installing existing package /packages/All/glproto-1.4.16.txz
Installing glproto-1.4.16... done
===> Returning to build of ugene-1.12.3
===> ugene-1.12.3 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in /usr/ports/x11/dri2proto
===> Installing existing package /packages/All/dri2proto-2.8.txz
Installing dri2proto-2.8... done
===> Returning to build of ugene-1.12.3
===> ugene-1.12.3 depends on file: /usr/local/libdata/pkgconfig/xtst.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/xtst.pc in /usr/ports/x11/libXtst
===> Installing existing package /packages/All/libXtst-1.2.2.txz
Installing libXtst-1.2.2...Installing xproto-7.0.24... done
Installing xextproto-7.2.1... done
Installing recordproto-1.14.2... done
Installing libxcb-1.9.1...Installing libXdmcp-1.1.1... done
Installing libXau-1.0.8... done
Installing libxml2-2.8.0_3... done
Installing libpthread-stubs-0.3_4... done
done
Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
done
Installing fixesproto-5.0... done
done
Installing libXext-1.3.2,1... done
Installing inputproto-2.3... done
done
done
===> Returning to build of ugene-1.12.3
===> ugene-1.12.3 depends on file: /usr/local/lib/qt4/libQtGui.so - not found
===> Verifying install for /usr/local/lib/qt4/libQtGui.so in /usr/ports/x11-toolkits/qt4-gui
===> Installing existing package /packages/All/qt4-gui-4.8.5.txz
Installing qt4-gui-4.8.5...Installing dejavu-2.34...Installing fontconfig-2.10.95,1...Installing expat-2.1.0... done
Installing freetype2-2.5.0.1... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
done
done
Installing encodings-1.0.4,1...Installing font-util-1.3.0... done
done
Installing font-bh-ttf-1.0.3...Installing mkfontscale-1.1.1...Installing libfontenc-1.1.2... done
done
Installing mkfontdir-1.0.7... done
done
Installing font-misc-ethiopic-1.0.3... done
Installing font-misc-meltho-1.0.3... done
Installing fontcacheproto-0.1.3... done
Installing gettext-0.18.3.1... done
Installing glib-2.36.3...Installing python27-2.7.6... done
Installing python2-2_1... done
Installing python-2.7_1,2... done
Installing perl5-5.16.3_3...Removing /usr/local/etc/perl5_version... Done.
Creating /usr/local/etc/perl5_version... Done.
Removing stale symlinks from /usr/bin...
Skipping /usr/bin/perl
Skipping /usr/bin/perl5
Done.
Creating various symlinks in /usr/bin...
Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl
Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5
Done.
done
Installing pcre-8.33... done
Installing libffi-3.0.13... done
No schema files found: doing nothing.
done
Installing hicolor-icon-theme-0.12... done
Installing icu-50.1.2... done
Installing libICE-1.0.8,1... done
<snip>
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RF_SArray_TandemFinder.o _tmp/moc/release/moc_RF_SArray_TandemFinder.cpp
In file included from _tmp/moc/release/moc_RF_SArray_TandemFinder.cpp:9:
In file included from _tmp/moc/release/../../../src/RF_SArray_TandemFinder.h:25:
In file included from ../../include/U2Core/AppResources.h:1:
./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:65:27: warning: field '_maxUse' will be initialized after field 'name' [-Wreorder]
: resourceId(id), _maxUse(_maxUse), name(_name), suffix(_suffix), systemUse(0) {}
^
./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:157:30: warning: unused parameter 'n' [-Wunused-parameter]
virtual void release(int n, MemoryLockType lt = TaskMemory) {
^
In file included from _tmp/moc/release/moc_RF_SArray_TandemFinder.cpp:9:
In file included from _tmp/moc/release/../../../src/RF_SArray_TandemFinder.h:39:
In file included from src/RFBase.h:27:
In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
3 warnings generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFBase.h -o _tmp/moc/release/moc_RFBase.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFBase.o _tmp/moc/release/moc_RFBase.cpp
In file included from _tmp/moc/release/moc_RFBase.cpp:9:
In file included from _tmp/moc/release/../../../src/RFBase.h:27:
In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
1 warning generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFDiagonal.h -o _tmp/moc/release/moc_RFDiagonal.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFDiagonal.o _tmp/moc/release/moc_RFDiagonal.cpp
In file included from _tmp/moc/release/moc_RFDiagonal.cpp:9:
In file included from _tmp/moc/release/../../../src/RFDiagonal.h:25:
In file included from src/RFBase.h:27:
In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
1 warning generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFSArray.h -o _tmp/moc/release/moc_RFSArray.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFSArray.o _tmp/moc/release/moc_RFSArray.cpp
In file included from _tmp/moc/release/moc_RFSArray.cpp:9:
In file included from _tmp/moc/release/../../../src/RFSArray.h:31:
In file included from src/RFBase.h:27:
In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
1 warning generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFSArrayWK.h -o _tmp/moc/release/moc_RFSArrayWK.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFSArrayWK.o _tmp/moc/release/moc_RFSArrayWK.cpp
In file included from _tmp/moc/release/moc_RFSArrayWK.cpp:9:
In file included from _tmp/moc/release/../../../src/RFSArrayWK.h:27:
In file included from src/RFBase.h:27:
In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
1 warning generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFTaskFactory.h -o _tmp/moc/release/moc_RFTaskFactory.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFTaskFactory.o _tmp/moc/release/moc_RFTaskFactory.cpp
In file included from _tmp/moc/release/moc_RFTaskFactory.cpp:9:
In file included from _tmp/moc/release/../../../src/RFTaskFactory.h:25:
In file included from ../../include/U2Algorithm/RepeatFinderTaskFactory.h:1:
In file included from ../../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderTaskFactory.h:25:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
1 warning generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RepeatQuery.h -o _tmp/moc/release/moc_RepeatQuery.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RepeatQuery.o _tmp/moc/release/moc_RepeatQuery.cpp
In file included from _tmp/moc/release/moc_RepeatQuery.cpp:9:
In file included from _tmp/moc/release/../../../src/RepeatQuery.h:25:
In file included from src/FindRepeatsTask.h:25:
In file included from src/RFBase.h:27:
In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
In file included from _tmp/moc/release/moc_RepeatQuery.cpp:9:
In file included from _tmp/moc/release/../../../src/RepeatQuery.h:25:
src/FindRepeatsTask.h:42:71: warning: field 'excludeTandems' will be initialized after field 'filter' [-Wreorder]
algo(RFAlgorithm_Auto), nThreads(MAX_PARALLEL_SUBTASKS_AUTO), excludeTandems(false)
^
2 warnings generated.
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TandemQuery.h -o _tmp/moc/release/moc_TandemQuery.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TandemQuery.o _tmp/moc/release/moc_TandemQuery.cpp
In file included from _tmp/moc/release/moc_TandemQuery.cpp:9:
In file included from _tmp/moc/release/../../../src/TandemQuery.h:25:
In file included from src/RF_SArray_TandemFinder.h:25:
In file included from ../../include/U2Core/AppResources.h:1:
./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:65:27: warning: field '_maxUse' will be initialized after field 'name' [-Wreorder]
: resourceId(id), _maxUse(_maxUse), name(_name), suffix(_suffix), systemUse(0) {}
^
./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:157:30: warning: unused parameter 'n' [-Wunused-parameter]
virtual void release(int n, MemoryLockType lt = TaskMemory) {
^
In file included from _tmp/moc/release/moc_TandemQuery.cpp:9:
In file included from _tmp/moc/release/../../../src/TandemQuery.h:25:
In file included from src/RF_SArray_TandemFinder.h:39:
In file included from src/RFBase.h:27:
In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1:
./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder]
: x(_x), y(_y), l(_len), c(_c), fragment(_fragment)
^
3 warnings generated.
/usr/local/bin/rcc -name repeat_finder repeat_finder.qrc -o _tmp/rcc/qrc_repeat_finder.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/qrc_repeat_finder.o _tmp/rcc/qrc_repeat_finder.cpp
rm -f librepeat_finder.so
c++ -pthread -Wl,-rpath,/usr/local/lib/qt4 -shared -o librepeat_finder.so _tmp/obj/release/FindRepeatsDialog.o _tmp/obj/release/FindRepeatsTask.o _tmp/obj/release/FindTandemsDialog.o _tmp/obj/release/RepeatFinderPlugin.o _tmp/obj/release/RepeatFinderTests.o _tmp/obj/release/RepeatWorker.o _tmp/obj/release/RF_SArray_TandemFinder.o _tmp/obj/release/RF_SuffixArray.o _tmp/obj/release/RFBase.o _tmp/obj/release/RFDiagonal.o _tmp/obj/release/RFSArray.o _tmp/obj/release/RFSArrayWK.o _tmp/obj/release/RFTaskFactory.o _tmp/obj/release/RepeatQuery.o _tmp/obj/release/RepeatTest.o _tmp/obj/release/TandemQuery.o _tmp/obj/release/moc_FindRepeatsDialog.o _tmp/obj/release/moc_FindRepeatsTask.o _tmp/obj/release/moc_FindTandemsDialog.o _tmp/obj/release/moc_RepeatFinderPlugin.o _tmp/obj/release/moc_RepeatFinderTests.o _tmp/obj/release/moc_RepeatWorker.o _tmp/obj/release/moc_RF_SArray_TandemFinder.o _tmp/obj/release/moc_RFBase.o _tmp/obj/release/moc_RFDiagonal.o _tmp/obj/release/m
oc_RFSArray.o _tmp/obj/release/moc_RFSArrayWK.o _tmp/obj/release/moc_RFTaskFactory.o _tmp/obj/release/moc_RepeatQuery.o _tmp/obj/release/moc_TandemQuery.o _tmp/obj/release/qrc_repeat_finder.o -L/usr/local/lib/qt4 -L/usr/local/lib -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Designer -lQtWebKit -lQtScript -L/usr/local/lib/qt4 -L/usr/local/lib -lQtSvg -lQtXml -lQtGui -lQtNetwork -lQtCore
mv -f librepeat_finder.so ../../_release/plugins/
cd src/plugins/test_runner/ && /usr/bin/make -f Makefile release
/usr/bin/make -f Makefile.Release
/usr/local/bin/uic-qt4 src/ui/Reporter.ui -o _tmp/ui/ui_Reporter.h
/usr/local/bin/uic-qt4 src/ui/TestView.ui -o _tmp/ui/ui_TestView.h
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTestScriptWrapper.o src/GTestScriptWrapper.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/TestRunnerPlugin.o src/TestRunnerPlugin.cpp
In file included from src/TestRunnerPlugin.cpp:22:
In file included from src/TestRunnerPlugin.h:25:
In file included from ../../include/U2Core/PluginModel.h:1:
In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/PluginModel.h:25:
In file included from ../../include/U2Core/global.h:1:
In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/global.h:25:
In file included from ../../include/U2Core/U2IdTypes.h:1:
In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/U2IdTypes.h:27:
In file included from ../../include/U2Core/U2Identity.h:1:
In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/U2Identity.h:25:
In file included from /usr/local/include/qt4/QtCore/QHash:1:
In file included from /usr/local/include/qt4/QtCore/qhash.h:48:
/usr/local/include/qt4/QtCore/qlist.h:431:33: warning: delete called on 'U2::ServiceType' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
while(from != to) --to, delete reinterpret_cast<T*>(to->v);
^
/usr/local/include/qt4/QtCore/qlist.h:757:5: note: in instantiation of member function 'QList<U2::ServiceType>::node_destruct' requested here
node_destruct(reinterpret_cast<Node *>(data->array + data->begin),
^
/usr/local/include/qt4/QtCore/qlist.h:732:9: note: in instantiation of member function 'QList<U2::ServiceType>::free' requested here
free(d);
^
./../include/U2Core/../../corelibs/U2Core/src/globals/ServiceModel.h:59:52: note: in instantiation of member function 'QList<U2::ServiceType>::~QList' requested here
const QList<ServiceType>& parentServices = QList<ServiceType>(),
^
1 warning generated.
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/TestViewController.o src/TestViewController.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/TestViewReporter.o src/TestViewReporter.cpp
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TestRunnerPlugin.h -o _tmp/moc/release/moc_TestRunnerPlugin.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TestRunnerPlugin.o _tmp/moc/release/moc_TestRunnerPlugin.cpp
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TestViewController.h -o _tmp/moc/release/moc_TestViewController.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TestViewController.o _tmp/moc/release/moc_TestViewController.cpp
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TestViewReporter.h -o _tmp/moc/release/moc_TestViewReporter.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TestViewReporter.o _tmp/moc/release/moc_TestViewReporter.cpp
/usr/local/bin/rcc -name test_runner test_runner.qrc -o _tmp/rcc/qrc_test_runner.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/qrc_test_runner.o _tmp/rcc/qrc_test_runner.cpp
rm -f libtest_runner.so
c++ -pthread -Wl,-rpath,/usr/local/lib/qt4 -shared -o libtest_runner.so _tmp/obj/release/GTestScriptWrapper.o _tmp/obj/release/TestRunnerPlugin.o _tmp/obj/release/TestViewController.o _tmp/obj/release/TestViewReporter.o _tmp/obj/release/moc_TestRunnerPlugin.o _tmp/obj/release/moc_TestViewController.o _tmp/obj/release/moc_TestViewReporter.o _tmp/obj/release/qrc_test_runner.o -L/usr/local/lib/qt4 -L/usr/local/lib -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Designer -lQtWebKit -lQtTest -L/usr/local/lib/qt4 -L/usr/local/lib -lQtScript -lQtSvg -lQtXml -lQtGui -lQtNetwork -lQtCore
mv -f libtest_runner.so ../../_release/plugins/
cd src/plugins/perf_monitor/ && /usr/bin/make -f Makefile release
/usr/bin/make -f Makefile.Release
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/PerfMonitorPlugin.o src/PerfMonitorPlugin.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/PerfMonitorView.o src/PerfMonitorView.cpp
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include src/PerfMonitorPlugin.h -o _tmp/moc/release/moc_PerfMonitorPlugin.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_PerfMonitorPlugin.o _tmp/moc/release/moc_PerfMonitorPlugin.cpp
/usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include src/PerfMonitorView.h -o _tmp/moc/release/moc_PerfMonitorView.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_PerfMonitorView.o _tmp/moc/release/moc_PerfMonitorView.cpp
/usr/local/bin/rcc -name perf_monitor perf_monitor.qrc -o _tmp/rcc/qrc_perf_monitor.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/qrc_perf_monitor.o _tmp/rcc/qrc_perf_monitor.cpp
rm -f libperf_monitor.so
c++ -pthread -Wl,-rpath,/usr/local/lib/qt4 -shared -o libperf_monitor.so _tmp/obj/release/PerfMonitorPlugin.o _tmp/obj/release/PerfMonitorView.o _tmp/obj/release/moc_PerfMonitorPlugin.o _tmp/obj/release/moc_PerfMonitorView.o _tmp/obj/release/qrc_perf_monitor.o -L/usr/local/lib/qt4 -L/usr/local/lib -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Designer -lQtWebKit -lQtScript -L/usr/local/lib/qt4 -L/usr/local/lib -lQtSvg -lQtXml -lQtGui -lQtNetwork -lQtCore
mv -f libperf_monitor.so ../../_release/plugins/
cd src/plugins/smith_waterman/ && /usr/bin/make -f Makefile release
/usr/bin/make -f Makefile.Release
/usr/local/bin/uic-qt4 src/ui/PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.ui -o _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -msse2 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DSW2_BUILD_WITH_SSE2 -DSW2_BUILD_WITH_OPENCL -DOPENCL_SUPPORT -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/PairAlignSequences.o src/PairAlignSequences.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -msse2 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DSW2_BUILD_WITH_SSE2 -DSW2_BUILD_WITH_OPENCL -DOPENCL_SUPPORT -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/SmithWatermanAlgorithm.o src/SmithWatermanAlgorithm.cpp
c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -msse2 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DSW2_BUILD_WITH_SSE2 -DSW2_BUILD_WITH_OPENCL -DOPENCL_SUPPORT -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/SmithWatermanAlgorithmSSE2.o src/SmithWatermanAlgorithmSSE2.cpp
src/SmithWatermanAlgorithmSSE2.cpp:54:45: error: use of undeclared identifier '_mm_movpi64_epi64'; did you mean '_mm_movpi64_pi64'?
inline __m128i xmm_load8(__m64* m) { return _mm_movpi64_epi64(*m); }
^~~~~~~~~~~~~~~~~
_mm_movpi64_pi64
/usr/include/clang/3.3/emmintrin.h:1347:1: note: '_mm_movpi64_pi64' declared here
_mm_movpi64_pi64(__m64 __a)
^
src/SmithWatermanAlgorithmSSE2.cpp:63:76: warning: unused parameter 'sm' [-Wunused-parameter]
quint64 SmithWatermanAlgorithmSSE2::estimateNeededRamAmount(const SMatrix& sm, QByteArray
^
1 warning and 1 error generated.
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3/src/plugins/smith_waterman
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3/src/plugins/smith_waterman
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ugene
===> Cleaning for ugene-1.12.3
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