[REL - head-i386-default][science/jmol] Failed for jmol-13.2.3 in build/runaway
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Nov 21 22:39:22 UTC 2013
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: pawel at FreeBSD.org
Ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $
Log URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-11-21_12h33m28s/logs/jmol-13.2.3.log
Build URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-11-21_12h33m28s
Log:
====>> Building science/jmol
build started at Thu Nov 21 20:26:33 UTC 2013
port directory: /usr/ports/science/jmol
building for: FreeBSD head-i386-default-job-21 11.0-CURRENT FreeBSD 11.0-CURRENT r256430 i386
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $
Poudriere version: 3.1-pre
---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1100000
UNAME_v=FreeBSD 11.0-CURRENT r256430
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref
PKG_EXT=txz
tpid=33391
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=jmol-13.2.3
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=head-i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for jmol-13.2.3:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk7 SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"
JAVAJARDIR="/usr/local/share/java/classes"
JAVALIBDIR="/usr/local/share/java/classes"
JAVA_VERSION="1.7+"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/jmol
DOCSDIR=/usr/local/share/doc/jmol
EXAMPLESDIR=/usr/local/share/examples/jmol
WWWDIR=/usr/local/www/jmol
ETCDIR=/usr/local/etc/jmol
--End SUB_LIST--
---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for jmol-13.2.3
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> jmol-13.2.3 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.1.4_10.txz
Installing pkg-1.1.4_10... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of jmol-13.2.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by jmol-13.2.3 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by jmol-13.2.3 for building
=> SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz.
=> SHA256 Checksum OK for selfSignedCertificate.cer.
=> SHA256 Checksum OK for selfSignedCertificate.store.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by jmol-13.2.3 for building
===> Extracting for jmol-13.2.3
=> SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz.
=> SHA256 Checksum OK for selfSignedCertificate.cer.
=> SHA256 Checksum OK for selfSignedCertificate.store.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for jmol-13.2.3
===========================================================================
=======================<phase: build-depends >============================
===> jmol-13.2.3 depends on file: /usr/local/openjdk7/bin/java - not found
===> Verifying install for /usr/local/openjdk7/bin/java in /usr/ports/java/openjdk7
===> Installing existing package /packages/All/openjdk-7.25.15_2.txz
Installing openjdk-7.25.15_2...Installing xproto-7.0.24... done
Installing xextproto-7.2.1... done
Installing renderproto-0.11.1... done
Installing recordproto-1.14.2... done
Installing libxcb-1.9.1...Installing libXdmcp-1.1.1... done
Installing libXau-1.0.8... done
Installing libxml2-2.8.0_2... done
Installing libpthread-stubs-0.3_4... done
done
Installing libXtst-1.2.2...Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
done
Installing fixesproto-5.0... done
done
Installing libXext-1.3.2,1... done
Installing inputproto-2.3... done
done
done
Installing libXrender-0.9.8... done
Installing libSM-1.2.2,1...Installing libICE-1.0.8,1... done
done
Installing libXt-1.1.4,1... done
Installing fontconfig-2.10.95,1...Installing expat-2.1.0... done
Installing freetype2-2.5.0.1... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
done
Installing dejavu-2.34... done
Installing mpfr-3.1.2...Installing gmp-5.1.3... done
done
Installing mpc-1.0.1... done
Installing gcc-ecj-4.5... done
Installing gcc-4.6.4...Installing binutils-2.23.2...Installing gettext-0.18.3.1... done
done
done
Installing javavmwrapper-2.4_3... done
Installing java-zoneinfo-2013.h... done
Installing alsa-lib-1.0.27.2... done
done
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/lib/X11/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===> Returning to build of jmol-13.2.3
===> jmol-13.2.3 depends on file: /usr/local/bin/ant - not found
===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant
===> Installing existing package /packages/All/apache-ant-1.8.4.txz
Installing apache-ant-1.8.4...Installing xbitmaps-1.1.1... done
Installing printproto-1.0.5... done
Installing libXpm-3.5.11... done
Installing libXp-1.0.2,1... done
Installing open-motif-2.3.4...Installing libXmu-1.1.2,1... done
Installing libXaw-1.0.12,2... done
Installing libXft-2.3.1... done
Installing png-1.5.17... done
Installing jpeg-8_4... done
done
Installing openjdk6-b28_5... done
done
<snip>
[echo] Generating history of changes (nl)
[echo] Generating history of changes (ro)
javadoc:
[mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/javadoc
[javadoc] Generating Javadoc
[javadoc] Javadoc execution
[javadoc] Loading source files for package org.jmol.adapter.readers.cifpdb...
[javadoc] Loading source files for package org.jmol.adapter.readers.molxyz...
[javadoc] Loading source files for package org.jmol.adapter.readers.more...
[javadoc] Loading source files for package org.jmol.adapter.readers.pymol...
[javadoc] Loading source files for package org.jmol.adapter.readers.quantum...
[javadoc] Loading source files for package org.jmol.adapter.readers.simple...
[javadoc] Loading source files for package org.jmol.adapter.readers.xml...
[javadoc] Loading source files for package org.jmol.adapter.readers.xtal...
[javadoc] Loading source files for package org.jmol.adapter.smarter...
[javadoc] Loading source files for package org.jmol.api...
[javadoc] Loading source files for package org.jmol.applet...
[javadoc] Loading source files for package org.jmol.appletjs...
[javadoc] Loading source files for package org.jmol.atomdata...
[javadoc] Loading source files for package org.jmol.awt...
[javadoc] Loading source files for package org.jmol.awtjs...
[javadoc] Loading source files for package org.jmol.awtjs2d...
[javadoc] Loading source files for package org.jmol.bspt...
[javadoc] Loading source files for package org.jmol.console...
[javadoc] Loading source files for package org.jmol.consolejs...
[javadoc] Loading source files for package org.jmol.constant...
[javadoc] Loading source files for package org.jmol.export...
[javadoc] Loading source files for package org.jmol.export.dialog...
[javadoc] Loading source files for package org.jmol.export.history...
[javadoc] Loading source files for package org.jmol.export.image...
[javadoc] Loading source files for package org.jmol.exportjs...
[javadoc] Loading source files for package org.jmol.g3d...
[javadoc] Loading source files for package org.jmol.geodesic...
[javadoc] Loading source files for package org.jmol.i18n...
[javadoc] Loading source files for package org.jmol.io...
[javadoc] Loading source files for package org.jmol.io2...
[javadoc] Loading source files for package org.jmol.jvxl.api...
[javadoc] Loading source files for package org.jmol.jvxl.calc...
[javadoc] Loading source files for package org.jmol.jvxl.data...
[javadoc] Loading source files for package org.jmol.jvxl.readers...
[javadoc] Loading source files for package org.jmol.minimize...
[javadoc] Loading source files for package org.jmol.minimize.forcefield...
[javadoc] Loading source files for package org.jmol.modelkit...
[javadoc] Loading source files for package org.jmol.modelset...
[javadoc] Loading source files for package org.jmol.modelsetbio...
[javadoc] Loading source files for package org.jmol.multitouch...
[javadoc] Loading source files for package org.jmol.multitouch.jni...
[javadoc] Loading source files for package org.jmol.multitouch.sparshui...
[javadoc] Loading source files for package org.jmol.navigate...
[javadoc] Loading source files for package org.jmol.parallel...
[javadoc] Loading source files for package org.jmol.popup...
[javadoc] Loading source files for package org.jmol.quantum...
[javadoc] Loading source files for package org.jmol.render...
[javadoc] Loading source files for package org.jmol.renderbio...
[javadoc] Loading source files for package org.jmol.rendercgo...
[javadoc] Loading source files for package org.jmol.renderspecial...
[javadoc] Loading source files for package org.jmol.rendersurface...
[javadoc] Loading source files for package org.jmol.script...
[javadoc] Loading source files for package org.jmol.shape...
[javadoc] Loading source files for package org.jmol.shapebio...
[javadoc] Loading source files for package org.jmol.shapecgo...
[javadoc] Loading source files for package org.jmol.shapespecial...
[javadoc] Loading source files for package org.jmol.shapesurface...
[javadoc] Loading source files for package org.jmol.smiles...
[javadoc] Loading source files for package org.jmol.symmetry...
[javadoc] Loading source files for package org.jmol.thread...
[javadoc] Loading source files for package org.jmol.util...
[javadoc] Loading source files for package org.jmol.viewer...
[javadoc] Loading source files for package org.jmol.viewer.binding...
[javadoc] Loading source files for package org.openscience.chimetojmol...
[javadoc] Loading source files for package org.openscience.jmol.app...
[javadoc] Loading source files for package org.openscience.jmol.app.jmolpanel...
[javadoc] Loading source files for package org.openscience.jmol.app.jmolpanel.console...
[javadoc] Loading source files for package org.openscience.jmol.app.jsonkiosk...
[javadoc] Loading source files for package org.openscience.jmol.app.surfacetool...
[javadoc] Loading source files for package org.openscience.jmol.app.webexport...
[javadoc] Loading source files for package org.openscience.jvxl...
[javadoc] Loading source files for package org.openscience.jvxl.simplewriter...
[javadoc] Constructing Javadoc information...
[javadoc] javadoc: warning - Error fetching URL: http://download.oracle.com/javase/6/docs/api/package-list
[javadoc] javadoc: warning - Error fetching URL: http://download.java.net/media/java3d/javadoc/1.5.0/package-list
[javadoc] Standard Doclet version 1.7.0_25
[javadoc] Building tree for all the packages and classes...
[javadoc] Building index for all the packages and classes...
[javadoc] Generating /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/javadoc/index-all.html...
[javadoc] 1 error
[javadoc] 2 warnings
[javadoc] javadoc: error - java.lang.OutOfMemoryError: Please increase memory.
[javadoc] For example, on the JDK Classic or HotSpot VMs, add the option -J-Xmx
[javadoc] such as -J-Xmx32m.
doc:
classes:
[mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes
[javac] Compiling 727 source files to /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes
[javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 1 warning
[copy] Copying 152 files to /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes
check.libjars:
libjars:
[mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/appjars
[unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/jars/naga-3_0.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/appjars
[unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/jars/itext-1.4.5.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/appjars
[unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/jars/commons-cli-1.0.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/appjars
[unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/jars/JSpecView.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/appjars
[delete] Deleting directory /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/appjars/org/jmol
[touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/libjars.timestamp
main-i18n:
init-i18n:
check-executables:
check-uptodate-application-pot:
create-application-pot:
[echo] Skipping generation of Jmol.pot (gettext PO-template)
check-uptodate-applet-pot:
create-applet-pot:
[echo] Skipping generation of JmolApplet.pot (gettext PO-template)
update-pot:
update-application-po:
[echo] Skipping generation of .po gettext files for Jmol
update-applet-po:
[echo] Skipping generation of .po gettext files for JmolApplet
update-po:
update-application-catalog:
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_ar.class file for Jmol ...
[exec] 66 translated messages, 1 fuzzy translation, 362 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_ast.class file for Jmol ...
[exec] 30 translated messages, 399 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_az.class file for Jmol ...
[exec] 7 translated messages, 422 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_bs.class file for Jmol ...
[exec] 22 translated messages, 1 fuzzy translation, 406 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_ca.class file for Jmol ...
[exec] 427 translated messages, 1 fuzzy translation, 1 untranslated message.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_ca at valencia.class file for Jmol ...
[exec] msgfmt: not a valid Java class name: org.jmol.translation.Jmol.ca at valencia.Messages
[exec] 321 translated messages, 1 fuzzy translation, 107 untranslated messages.
[exec] Result: 1
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_cs.class file for Jmol ...
[exec] 426 translated messages, 1 fuzzy translation, 2 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_da.class file for Jmol ...
[exec] 415 translated messages, 1 fuzzy translation, 13 untranslated messages.
check-uptodate-application-catalog:
update-application-catalog-lang:
[echo] Updating messages_de.class file for Jmol ...
====>> Killing runaway build after 7200 seconds with no output
===> Cleaning for jmol-13.2.3
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