[REL - 91amd64-default][math/octave-forge-dicom] Failed for octave-forge-dicom-0.1.1_4 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Wed Nov 6 17:33:29 UTC 2013
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: stephen at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/math/octave-forge-dicom/Makefile 331644 2013-10-26 00:52:33Z gerald $
Log URL: http://beefy2.isc.freebsd.org/bulk/91amd64-default/2013-11-06_14h03m03s/logs/octave-forge-dicom-0.1.1_4.log
Build URL: http://beefy2.isc.freebsd.org/bulk/91amd64-default/2013-11-06_14h03m03s
Log:
====>> Building math/octave-forge-dicom
build started at Wed Nov 6 17:32:12 UTC 2013
port directory: /usr/ports/math/octave-forge-dicom
building for: FreeBSD 91amd64-default-job-18 9.1-RELEASE FreeBSD 9.1-RELEASE amd64
maintained by: stephen at FreeBSD.org
Makefile ident: $FreeBSD: head/math/octave-forge-dicom/Makefile 331644 2013-10-26 00:52:33Z gerald $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=901000
UNAME_v=FreeBSD 9.1-RELEASE
UNAME_r=9.1-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/91amd64-default/ref
PKG_EXT=txz
tpid=79694
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=octave-forge-dicom-0.1.1_4
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=91amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46"
--End CONFIGURE_ENV--
--MAKE_ENV--
PACKAGE=/wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom-0.1.1.tar.gz TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc46" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing" CPP="cpp46" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46" CXX="g++46" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL
_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/octave-forge-dicom
DOCSDIR=/usr/local/share/doc/octave-forge-dicom
EXAMPLESDIR=/usr/local/share/examples/octave-forge-dicom
WWWDIR=/usr/local/www/octave-forge-dicom
ETCDIR=/usr/local/etc/octave-forge-dicom
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for octave-forge-dicom-0.1.1_4
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> octave-forge-dicom-0.1.1_4 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.1.4_8.txz
Installing pkg-1.1.4_8... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of octave-forge-dicom-0.1.1_4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by octave-forge-dicom-0.1.1_4 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by octave-forge-dicom-0.1.1_4 for building
=> SHA256 Checksum OK for octave-forge/dicom-0.1.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by octave-forge-dicom-0.1.1_4 for building
===> Extracting for octave-forge-dicom-0.1.1_4
=> SHA256 Checksum OK for octave-forge/dicom-0.1.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for octave-forge-dicom-0.1.1_4
/usr/bin/sed -i.bak s/gdcm-2.0/gdcm-2.2/ /wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom/src/dicominfo.cpp /wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom/src/dicomdict.cpp /wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom/src/dicomread.cpp /wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom/src/dicomlookup.cpp /wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom/src/_gendicomdict.cpp /wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom/src/dicomwrite.cpp
===========================================================================
=======================<phase: build-depends >============================
===> octave-forge-dicom-0.1.1_4 depends on executable: octave - not found
===> Verifying install for octave in /usr/ports/math/octave
===> Installing existing package /packages/All/octave-3.6.4_6.txz
Installing octave-3.6.4_6...Installing xproto-7.0.24... done
Installing xineramaproto-1.2.1... done
Installing xf86vidmodeproto-2.3.1... done
Installing xextproto-7.2.1... done
Installing xcb-util-renderutil-0.3.8...Installing xcb-util-0.3.9_1,1...Installing libxcb-1.9.1...Installing libXdmcp-1.1.1... done
Installing libXau-1.0.8... done
Installing libxml2-2.8.0_2...Installing pkgconf-0.9.3... done
Installing libiconv-1.14_1... done
done
Installing libpthread-stubs-0.3_4... done
done
done
done
Installing xbitmaps-1.1.1... done
Installing videoproto-2.3.2... done
Installing renderproto-0.11.1... done
Installing randrproto-1.4.0... done
Installing printproto-1.0.5... done
Installing pixman-0.30.2... done
Installing libXxf86vm-1.1.3...Installing libXext-1.3.2,1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
done
done
done
Installing libXv-1.0.10,1... done
Installing libXrender-0.9.8... done
Installing libXrandr-1.4.2... done
Installing libXpm-3.5.11...Installing libSM-1.2.2,1...Installing libICE-1.0.8,1... done
done
Installing libXt-1.1.4,1... done
done
Installing libXp-1.0.2,1... done
Installing libXinerama-1.1.3,1... done
Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing fixesproto-5.0... done
done
Installing inputproto-2.3... done
done
Installing libXdamage-1.1.4...Installing damageproto-1.2.1... done
done
Installing libXcursor-1.1.14... done
Installing libXcomposite-0.4.4,1...Installing compositeproto-0.4.2... done
done
Installing dri2proto-2.8... done
Installing wxgtk2-common-2.8.12_2...Installing pangox-compat-0.0.2...Installing pango-1.34.1_1...Installing xorg-fonts-truetype-7.7_1...Installing mkfontscale-1.1.1...Installing libfontenc-1.1.2... done
Installing freetype2-2.5.0.1... done
done
Installing mkfontdir-1.0.7... done
Installing fontconfig-2.10.95,1...Installing expat-2.1.0... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
done
Installing font-util-1.3.0... done
Installing font-misc-meltho-1.0.3... done
Installing font-misc-ethiopic-1.0.3... done
Installing font-bh-ttf-1.0.3... done
Installing encodings-1.0.4,1... done
Installing dejavu-2.34... done
done
Installing libXft-2.3.1... done
Installing harfbuzz-0.9.19...Installing python27-2.7.5_3...Installing gettext-0.18.3.1... done
done
Installing python2-2_1... done
Installing python-2.7_1,2... done
Installing perl5-5.16.3_2...Removing /usr/local/etc/perl5_version... Done.
Creating /usr/local/etc/perl5_version... Done.
Removing stale symlinks from /usr/bin...
Skipping /usr/bin/perl
Skipping /usr/bin/perl5
Done.
Creating various symlinks in /usr/bin...
Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl
Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5
Done.
done
Installing png-1.5.17... done
Installing graphite2-1.2.3... done
Installing cairo-1.10.2_6,2...Installing pcre-8.33... done
Installing libffi-3.0.13... done
Installing glib-2.36.3...No schema files found: doing nothing.
done
done
<snip>
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more fonts,
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macros, math definitions,
skipping used \tenex in plain
output routines, hyphenation
skipping \input in plain
skipping \tenrm in plain
)) (/usr/local/share/texmf-dist/tex/context/base/supp-pdf.tex
(/usr/local/share/texmf-dist/tex/context/base/supp-mis.tex
loading : Context Support Macros / Miscellaneous (2004.10.26)
)
loading : Context Support Macros / PDF (2004.03.26)
) (/usr/local/share/texmf-dist/tex/context/base/supp-mpe.tex
loading : MetaPost Special Extensions
) )
Beginning to dump on file mptopdf.fmt
(format=mptopdf 2013.11.6)
2936 strings of total length 42585
13044 memory locations dumped; current usage is 110&12929
1458 multiletter control sequences
\font\nullfont=nullfont
0 words of font info for 0 preloaded fonts
0 hyphenation exceptions
Hyphenation trie of length 256 has 0 ops out of 35111
No pages of output.
Transcript written on mptopdf.log.
fmtutil: /usr/local/share/texmf-var/web2c/aleph.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/cont-en.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/etex.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/lambda.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/lamed.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/latex.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/mptopdf.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/omega.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/pdfetex.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/pdflatex.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/pdftex.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/tex.fmt installed.
fmtutil: /usr/local/share/texmf-var/web2c/metafun.mem installed.
fmtutil: /usr/local/share/texmf-var/web2c/mpost.mem installed.
fmtutil: /usr/local/share/texmf-var/web2c/mf.base installed.
done
Installing suitesparse-4.0.2_2...Installing mpfr-3.1.2...Installing gmp-5.1.3... done
done
Installing mpc-1.0.1... done
Installing lapack-3.4.2_1...Installing blas-3.4.2_1...Installing gcc-ecj-4.5... done
Installing gcc-4.6.4...Installing binutils-2.23.2... done
done
done
done
done
Installing qrupdate-1.1.2_1... done
Installing qhull5-1.0_2... done
Installing gnuplot-4.6.3_2...Installing plotutils-2.6_3,1... done
done
Installing glpk-4.52.1... done
Installing fftw3-float-3.3.3_1... done
Installing fftw3-3.3.3_1... done
Installing arpack-96_11... done
Installing libwmf-0.2.8.4_10... done
Installing libfpx-1.3.1.3... done
Installing lcms-1.19_1,1... done
Installing ftgl-2.1.3.r5,1... done
Installing GraphicsMagick-1.1.15_5,1... done
Installing curl-7.33.0_1... done
done
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/lib/X11/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
====
Note that some of the standard modules are provided as separate
ports since they require extra dependencies:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
Install them as needed.
====
Note: in order to use the script "dvipdf", dvips must be installed.
This program may be provided by either print/dvips or print/dvipsk-tetex
(print/dvipsk-tetex may be preferable since it doesn't conflict with
tetex things).
FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.06/Resource/Init
have to be configured if you want to use FAPI feature.
=== IMPORTANT NOTICE ===
- You may want to run texconfig(1) to configure teTeX for your
local environment. You will find teTeX's local documentation
in /usr/local/share/texmf-dist/doc/.
- Note that if you have environment variables for teTeX in a wrong
way (such as TEXINPUTS, TEXMF, TEXMFCNF, and so on),
they may prevent teTeX from working.
===> Returning to build of octave-forge-dicom-0.1.1_4
===> octave-forge-dicom-0.1.1_4 depends on executable: gmake - not found
===> Verifying install for gmake in /usr/ports/devel/gmake
===> Installing existing package /packages/All/gmake-3.82_1.txz
Installing gmake-3.82_1... done
===> Returning to build of octave-forge-dicom-0.1.1_4
===> octave-forge-dicom-0.1.1_4 depends on executable: gcc46 - found
===> octave-forge-dicom-0.1.1_4 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> octave-forge-dicom-0.1.1_4 depends on shared library: gdcmCommon - not found
===> Verifying install for gdcmCommon in /usr/ports/devel/gdcm
===> Installing existing package /packages/All/gdcm-2.4.0.txz
Installing gdcm-2.4.0...Installing openjpeg-1.5.0_2... done
done
===> Returning to build of octave-forge-dicom-0.1.1_4
===> octave-forge-dicom-0.1.1_4 depends on shared library: pcre - found
===========================================================================
=======================<phase: configure >============================
===> Configuring for octave-forge-dicom-0.1.1_4
===========================================================================
=======================<phase: build >============================
===> Building for octave-forge-dicom-0.1.1_4
mkoctfile -c -g dicominfo.cpp
dicominfo.cpp:45:33: fatal error: gdcm-2.2/gdcmReader.h: No such file or directory
compilation terminated.
gmake: *** [dicominfo.o] Error 1
*** [do-build] Error code 1
Stop in /usr/ports/math/octave-forge-dicom.
===> Cleaning for octave-forge-dicom-0.1.1_4
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