[REL - 83amd64-default][math/jakarta-commons-math] Failed for jakarta-commons-math-2.2 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Wed Oct 23 10:35:00 UTC 2013
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: 5u623l20 at gmail.com
Last committer: bapt at FreeBSD.org
Ident: $FreeBSD: head/math/jakarta-commons-math/Makefile 327746 2013-09-20 20:55:04Z bapt $
Log URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2013-10-23_01h02m30s/logs/jakarta-commons-math-2.2.log
Build URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2013-10-23_01h02m30s
Log:
====>> Building math/jakarta-commons-math
build started at Wed Oct 23 10:34:03 UTC 2013
port directory: /usr/ports/math/jakarta-commons-math
building for: FreeBSD 83amd64-default-job-19 8.3-RELEASE FreeBSD 8.3-RELEASE amd64
maintained by: 5u623l20 at gmail.com
Makefile ident: $FreeBSD: head/math/jakarta-commons-math/Makefile 327746 2013-09-20 20:55:04Z bapt $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=803000
UNAME_v=FreeBSD 8.3-RELEASE
UNAME_r=8.3-RELEASE
FTP_PASSIVE_MODE=YES
BLOCKSIZE=K
MAIL=/var/mail/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/83amd64-default/ref
PKG_EXT=txz
tpid=17270
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=jakarta-commons-math-2.2
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=83amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk6 TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"
JAVAJARDIR="/usr/local/share/java/classes"
JAVALIBDIR="/usr/local/share/java/classes"
JAVA_VERSION="1.6+"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/commons-math
DOCSDIR=/usr/local/share/doc/commons-math
EXAMPLESDIR=/usr/local/share/examples/commons-math
WWWDIR=/usr/local/www/commons-math
ETCDIR=/usr/local/etc/commons-math
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for jakarta-commons-math-2.2
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> jakarta-commons-math-2.2 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.1.4_8.txz
Installing pkg-1.1.4_8... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of jakarta-commons-math-2.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by jakarta-commons-math-2.2 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by jakarta-commons-math-2.2 for building
=> SHA256 Checksum OK for commons-math-2.2-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by jakarta-commons-math-2.2 for building
===> Extracting for jakarta-commons-math-2.2
=> SHA256 Checksum OK for commons-math-2.2-src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for jakarta-commons-math-2.2
===> Applying FreeBSD patches for jakarta-commons-math-2.2
/usr/bin/sed -i.bak -e 's#junit-#junit#g' -e 's#/usr/share/junit#/usr/local/share/java/classes#g' /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/build.xml
===========================================================================
=======================<phase: build-depends >============================
===> jakarta-commons-math-2.2 depends on file: /usr/local/share/java/classes/commons-logging.jar - not found
===> Verifying install for /usr/local/share/java/classes/commons-logging.jar in /usr/ports/java/jakarta-commons-logging
===> Installing existing package /packages/All/jakarta-commons-logging-1.1.1.txz
Installing jakarta-commons-logging-1.1.1...Installing xproto-7.0.24... done
Installing xextproto-7.2.1... done
Installing xbitmaps-1.1.1... done
Installing renderproto-0.11.1... done
Installing recordproto-1.14.2... done
Installing printproto-1.0.5... done
Installing libxcb-1.9.1...Installing libXdmcp-1.1.1... done
Installing libXau-1.0.8... done
Installing libxml2-2.8.0_2...Installing pkgconf-0.9.3... done
Installing libiconv-1.14_1... done
done
Installing libpthread-stubs-0.3_4... done
done
Installing libXtst-1.2.2...Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
done
Installing fixesproto-5.0... done
done
Installing libXext-1.3.2,1... done
Installing inputproto-2.3... done
done
done
Installing libXrender-0.9.8... done
Installing libXpm-3.5.11...Installing libSM-1.2.2,1...Installing libICE-1.0.8,1... done
done
Installing libXt-1.1.4,1... done
done
Installing libXp-1.0.2,1... done
Installing open-motif-2.3.4...Installing libXmu-1.1.2,1... done
Installing libXaw-1.0.12,2... done
Installing libXft-2.3.1...Installing fontconfig-2.10.95,1...Installing expat-2.1.0... done
Installing freetype2-2.5.0.1... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
done
done
Installing png-1.5.17... done
Installing jpeg-8_4... done
done
Installing dejavu-2.34... done
Installing openjdk6-b28_2...Installing java-zoneinfo-2013.g... done
Installing javavmwrapper-2.4_3... done
done
done
Make sure that the freetype module is loaded. If it is not, add the following
line to the "Modules" section of your X Windows configuration file:
Load "freetype"
Add the following line to the "Files" section of X Windows configuration file:
FontPath "/usr/local/lib/X11/fonts/dejavu/"
Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
======================================================================
This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and
procfs(5) mounted on /proc.
If you have not done it yet, please do the following:
mount -t fdescfs fdesc /dev/fd
mount -t procfs proc /proc
To make it permanent, you need the following lines in /etc/fstab:
fdesc /dev/fd fdescfs rw 0 0
proc /proc procfs rw 0 0
======================================================================
===> Returning to build of jakarta-commons-math-2.2
===> jakarta-commons-math-2.2 depends on file: /usr/local/share/java/classes/junit.jar - not found
===> Verifying install for /usr/local/share/java/classes/junit.jar in /usr/ports/java/junit
===> Installing existing package /packages/All/junit-4.10.txz
Installing junit-4.10... done
===> Returning to build of jakarta-commons-math-2.2
===> jakarta-commons-math-2.2 depends on file: /usr/local/share/java/classes/commons-discovery.jar - not found
===> Verifying install for /usr/local/share/java/classes/commons-discovery.jar in /usr/ports/java/jakarta-commons-discovery
===> Installing existing package /packages/All/jakarta-commons-discovery-0.5.txz
Installing jakarta-commons-discovery-0.5... done
===> Returning to build of jakarta-commons-math-2.2
===> jakarta-commons-math-2.2 depends on file: /usr/local/openjdk6/bin/java - found
===> jakarta-commons-math-2.2 depends on file: /usr/local/bin/ant - not found
===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant
===> Installing existing package /packages/All/apache-ant-1.8.4.txz
Installing apache-ant-1.8.4... done
===> Returning to build of jakarta-commons-math-2.2
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for jakarta-commons-math-2.2
===========================================================================
=======================<phase: build >============================
===> Building for jakarta-commons-math-2.2
Buildfile: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/build.xml
init:
[echo] -------- Commons MATH 2.2 --------
[mkdir] Created dir: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target
[mkdir] Created dir: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/classes
[mkdir] Created dir: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/test-classes
[mkdir] Created dir: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/classes/META-INF
[copy] Copying 1 file to /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/classes/META-INF
compile:
[javac] Compiling 457 source files to /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/classes
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/src/main/java/org/apache/commons/math/stat/Frequency.java uses unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
check-availability:
[echo] doing check-availability...
download-dependencies:
[echo] doing download-dependencies...
download-junit:
compile.tests:
[javac] Compiling 300 source files to /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/test-classes
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[copy] Copying 11 files to /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/test-classes
test:
[mkdir] Created dir: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/target/test-reports
[junit] Running org.apache.commons.math.ArgumentOutsideDomainExceptionTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.027 sec
[junit] Running org.apache.commons.math.ConvergenceExceptionTest
[junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.028 sec
[junit] Running org.apache.commons.math.DuplicateSampleAbscissaExceptionTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.03 sec
[junit] Running org.apache.commons.math.FunctionEvaluationExceptionTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 0.049 sec
[junit] Running org.apache.commons.math.MathConfigurationExceptionTest
[junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.028 sec
[junit] Running org.apache.commons.math.MathExceptionTest
[junit] Tests run: 6, Failures: 0, Errors: 0, Time elapsed: 0.067 sec
[junit] Running org.apache.commons.math.MaxIterationsExceededExceptionTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.028 sec
[junit] Running org.apache.commons.math.analysis.BinaryFunctionTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 0.161 sec
[junit] Running org.apache.commons.math.analysis.ComposableFunctionTest
[junit] Tests run: 9, Failures: 0, Errors: 0, Time elapsed: 0.164 sec
[junit] Running org.apache.commons.math.analysis.integration.LegendreGaussIntegratorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.139 sec
[junit] Running org.apache.commons.math.analysis.integration.RombergIntegratorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.136 sec
[junit] Running org.apache.commons.math.analysis.integration.SimpsonIntegratorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.14 sec
[junit] Running org.apache.commons.math.analysis.integration.TrapezoidIntegratorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.196 sec
[junit] Running org.apache.commons.math.analysis.interpolation.BicubicSplineInterpolatingFunctionTest
[junit] Tests run: 5, Failures: 0, Errors: 0, Time elapsed: 0.089 sec
[junit] Running org.apache.commons.math.analysis.interpolation.BicubicSplineInterpolatorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.042 sec
[junit] Running org.apache.commons.math.analysis.interpolation.DividedDifferenceInterpolatorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.129 sec
[junit] Running org.apache.commons.math.analysis.interpolation.LinearInterpolatorTest
[junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.036 sec
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00000008008fd7ff, pid=25271, tid=61406701440
#
# JRE version: 6.0_32-b28
# Java VM: OpenJDK 64-Bit Server VM (23.25-b01 mixed mode bsd-amd64 compressed oops)
# Problematic frame:
# C [libc.so.7+0x7e7ff] free+0x1bf
#
# Core dump written. Default location: /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/core or core.25271
#
# An error report file with more information is saved as:
# /wrkdirs/usr/ports/math/jakarta-commons-math/work/commons-math-2.2-src/hs_err_pid25271.log
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
#
*** Signal 6
Stop in /usr/ports/math/jakarta-commons-math.
===> Cleaning for jakarta-commons-math-2.2
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