[package - 130releng-i386-default][biology/ngs-sdk] Failed for ngs-sdk-2.11.0_2 in stage

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Tue Apr 13 11:39:25 UTC 2021


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri at FreeBSD.org
Last committer: @FreeBSD.org
Ident:          Makefile ident: 
Log URL:        http://beefy15.nyi.freebsd.org/data/130releng-i386-default/46fc7df8540c/logs/ngs-sdk-2.11.0_2.log
Build URL:      http://beefy15.nyi.freebsd.org/build.html?mastername=130releng-i386-default&build=46fc7df8540c
Log:

=>> Building biology/ngs-sdk
build started at Tue Apr 13 11:38:39 UTC 2021
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-2.11.0_2
building for: FreeBSD 130releng-i386-default-job-08 13.0-RELEASE FreeBSD 13.0-RELEASE 1300139 i386
maintained by: yuri at FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400003
Jail OSVERSION: 1300139
Job Id: 08

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--MAINTAINER--
yuri at FreeBSD.org
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--CONFIGURE_ARGS--
--prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build"
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=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[130releng-i386-default-job-08] Installing pkg-1.16.3...
[130releng-i386-default-job-08] Extracting pkg-1.16.3: .......... done
===>   ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ngs-sdk-2.11.0_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
=> SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
===>  Extracting for ngs-sdk-2.11.0_2
=> SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ngs-sdk-2.11.0_2
===>  Applying FreeBSD patches for ngs-sdk-2.11.0_2 from /usr/ports/biology/ngs-sdk/files
===========================================================================
=======================<phase: build-depends  >============================
===>   ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.txz
[130releng-i386-default-job-08] Installing gmake-4.3_2...
[130releng-i386-default-job-08] `-- Installing gettext-runtime-0.21...
[130releng-i386-default-job-08] |   `-- Installing indexinfo-0.3.1...
[130releng-i386-default-job-08] |   `-- Extracting indexinfo-0.3.1: .... done
[130releng-i386-default-job-08] `-- Extracting gettext-runtime-0.21: .......... done
[130releng-i386-default-job-08] Extracting gmake-4.3_2: .......... done
===>   ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - found
===>   Returning to build of ngs-sdk-2.11.0_2
===>   ngs-sdk-2.11.0_2 depends on package: perl5>=5.32.r0<5.33 - not found
===>   Installing existing package /packages/All/perl5-5.32.1_1.txz
[130releng-i386-default-job-08] Installing perl5-5.32.1_1...
<snip>
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_FragmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/
 rel/obj/language/python/py_PileupEventIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o /wrkdirs/usr/ports
 /biology/ngs-sdk/work/ngs-2.11.0/build/ngs-s!
 dk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StringItf.pic.o
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch'
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sd
 k/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/VTable.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrBlock.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/di
 spatch/ErrorMsg.pic.o
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter'
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ng
 s-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrorMsg.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrBlock.pic.o
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2
ln -s libngs-adapt-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a
ln -s libngs-adapt-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a  
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++-static.a
ln -s libngs-adapt-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++-static.a  
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-c++.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-c++\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++/manifest )
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-disp\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp/manifest )
( ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2.11.0 `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp/manifest` )
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2
ln -s libngs-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a
ln -s libngs-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++-static.a
ln -s libngs-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++-static.a
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-java.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-java\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java/manifest )
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-python\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python/manifest )
clang++ -mmacosx-version-min=10.10 -arch i386 -DNDEBUG -O3 -shared -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2.11.0 -install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib32/libngs-sdk.so.2 -compatibility_version 2.11 -current_version 2.11.0 -flat_namespace -undefined suppress `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python/manifest` -L/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib -lngs-disp
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib32/libngs-sdk.so.2' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-compatibility_version 2.11' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-current_version 2.11.0' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-flat_namespace' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-undefined suppress' [-Wunused-command-line-argument]
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2
ln -s libngs-sdk.so.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so
ln -s libngs-sdk.so.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0'
===========================================================================
=======================<phase: run-depends    >============================
===========================================================================
=======================<phase: stage          >============================
===>  Staging for ngs-sdk-2.11.0_2
===>   Generating temporary packing list
cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) &&  /usr/bin/find -Ed $1 $3 \(   -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} +  -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE ngs /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include
/bin/rm -f -r /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include/ngs/win
cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) &&  /usr/bin/find -Ed $1 $3 \(   -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} +  -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib
cd: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib: No such file or directory
*** Error code 2

Stop.
make: stopped in /usr/ports/biology/ngs-sdk


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