[package - 122powerpc64-quarterly][math/mlpack] Failed for mlpack-3.4.1_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Mar 16 20:41:38 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: danilo at FreeBSD.org
Ident: $FreeBSD: branches/2021Q1/math/mlpack/Makefile 553653 2020-10-29 22:30:44Z danilo $
Log URL: http://pylon.nyi.freebsd.org/data/122powerpc64-quarterly/568039/logs/mlpack-3.4.1_1.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=122powerpc64-quarterly&build=568039
Log:
=>> Building math/mlpack
build started at Tue Mar 16 20:36:36 UTC 2021
port directory: /usr/ports/math/mlpack
package name: mlpack-3.4.1_1
building for: FreeBSD 122powerpc64-quarterly-job-09 12.2-RELEASE FreeBSD 12.2-RELEASE powerpc
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2021Q1/math/mlpack/Makefile 553653 2020-10-29 22:30:44Z danilo $
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===> The following configuration options are available for mlpack-3.4.1_1:
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===> Use 'make config' to modify these settings
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--MAINTAINER--
yuri at FreeBSD.org
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CC_OUTPUT_921dbbb2_58173849=yes
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CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> mlpack-3.4.1_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[122powerpc64-quarterly-job-09] Installing pkg-1.16.3...
[122powerpc64-quarterly-job-09] Extracting pkg-1.16.3: .......... done
===> mlpack-3.4.1_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of mlpack-3.4.1_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by mlpack-3.4.1_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by mlpack-3.4.1_1 for building
=> SHA256 Checksum OK for mlpack-3.4.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by mlpack-3.4.1_1 for building
===> Extracting for mlpack-3.4.1_1
=> SHA256 Checksum OK for mlpack-3.4.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for mlpack-3.4.1_1
===========================================================================
=======================<phase: build-depends >============================
===> mlpack-3.4.1_1 depends on package: ensmallen>0 - not found
===> Installing existing package /packages/All/ensmallen-2.14.2_1.txz
[122powerpc64-quarterly-job-09] Installing ensmallen-2.14.2_1...
[122powerpc64-quarterly-job-09] `-- Installing armadillo-10.1.1...
[122powerpc64-quarterly-job-09] | `-- Installing arpack-ng-3.8.0...
[122powerpc64-quarterly-job-09] | | `-- Installing blas-3.5.0_6...
[122powerpc64-quarterly-job-09] | | `-- Installing gcc9-9.3.0_2...
[122powerpc64-quarterly-job-09] | | | `-- Installing binutils-2.33.1_4,1...
[122powerpc64-quarterly-job-09] | | | `-- Installing gettext-runtime-0.21...
[122powerpc64-quarterly-job-09] | | | | `-- Installing indexinfo-0.3.1...
[122powerpc64-quarterly-job-09] | | | | `-- Extracting indexinfo-0.3.1: .... done
[122powerpc64-quarterly-job-09] | | | `-- Extracting gettext-runtime-0.21: .......... done
[122powerpc64-quarterly-job-09] | | | `-- Extracting binutils-2.33.1_4,1: .......... done
[122powerpc64-quarterly-job-09] | | | `-- Installing gmp-6.2.1...
[122powerpc64-quarterly-job-09] | | | `-- Extracting gmp-6.2.1: .......... done
[122powerpc64-quarterly-job-09] | | | `-- Installing mpc-1.1.0_2...
[122powerpc64-quarterly-job-09] | | | `-- Installing mpfr-4.1.0...
[122powerpc64-quarterly-job-09] | | | `-- Extracting mpfr-4.1.0: .......... done
<snip>
===> mlpack-3.4.1_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.19.2.txz
[122powerpc64-quarterly-job-09] Installing cmake-3.19.2...
[122powerpc64-quarterly-job-09] `-- Installing curl-7.74.0...
[122powerpc64-quarterly-job-09] | `-- Installing ca_root_nss-3.58...
[122powerpc64-quarterly-job-09] | `-- Extracting ca_root_nss-3.58: ........ done
[122powerpc64-quarterly-job-09] | `-- Installing libnghttp2-1.42.0...
[122powerpc64-quarterly-job-09] | `-- Extracting libnghttp2-1.42.0: .......... done
[122powerpc64-quarterly-job-09] `-- Extracting curl-7.74.0: .......... done
[122powerpc64-quarterly-job-09] `-- Installing expat-2.2.10...
[122powerpc64-quarterly-job-09] `-- Extracting expat-2.2.10: .......... done
[122powerpc64-quarterly-job-09] `-- Installing jsoncpp-1.9.4...
[122powerpc64-quarterly-job-09] `-- Extracting jsoncpp-1.9.4: .......... done
[122powerpc64-quarterly-job-09] `-- Installing libarchive-3.4.3,1...
[122powerpc64-quarterly-job-09] | `-- Installing liblz4-1.9.3,1...
[122powerpc64-quarterly-job-09] | `-- Extracting liblz4-1.9.3,1: .......... done
[122powerpc64-quarterly-job-09] | `-- Installing lzo2-2.10_1...
[122powerpc64-quarterly-job-09] | `-- Extracting lzo2-2.10_1: .......... done
[122powerpc64-quarterly-job-09] `-- Extracting libarchive-3.4.3,1: .......... done
[122powerpc64-quarterly-job-09] `-- Installing libuv-1.41.0...
[122powerpc64-quarterly-job-09] `-- Extracting libuv-1.41.0: .......... done
[122powerpc64-quarterly-job-09] `-- Installing rhash-1.4.0...
[122powerpc64-quarterly-job-09] `-- Extracting rhash-1.4.0: .......... done
[122powerpc64-quarterly-job-09] Extracting cmake-3.19.2: .......... done
=====
Message from ca_root_nss-3.58:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> mlpack-3.4.1_1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of mlpack-3.4.1_1
===> mlpack-3.4.1_1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.10.2,2.txz
[122powerpc64-quarterly-job-09] Installing ninja-1.10.2,2...
[122powerpc64-quarterly-job-09] `-- Installing python37-3.7.9_1...
[122powerpc64-quarterly-job-09] | `-- Installing libffi-3.3_1...
[122powerpc64-quarterly-job-09] | `-- Extracting libffi-3.3_1: .......... done
[122powerpc64-quarterly-job-09] | `-- Installing readline-8.0.4...
[122powerpc64-quarterly-job-09] | `-- Extracting readline-8.0.4: .......... done
[122powerpc64-quarterly-job-09] `-- Extracting python37-3.7.9_1: .......... done
[122powerpc64-quarterly-job-09] Extracting ninja-1.10.2,2: ........ done
=====
Message from python37-3.7.9_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py37-gdbm databases/py-gdbm at py37
py37-sqlite3 databases/py-sqlite3 at py37
py37-tkinter x11-toolkits/py-tkinter at py37
===> mlpack-3.4.1_1 depends on executable: ninja - found
===> Returning to build of mlpack-3.4.1_1
===> mlpack-3.4.1_1 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-1.7.3,1.txz
[122powerpc64-quarterly-job-09] Installing pkgconf-1.7.3,1...
[122powerpc64-quarterly-job-09] Extracting pkgconf-1.7.3,1: .......... done
===> mlpack-3.4.1_1 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of mlpack-3.4.1_1
===> mlpack-3.4.1_1 depends on executable: gcc9 - found
===> mlpack-3.4.1_1 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> mlpack-3.4.1_1 depends on shared library: libboost_program_options.so - found (/usr/local/lib/libboost_program_options.so)
===> mlpack-3.4.1_1 depends on shared library: libboost_unit_test_framework.so - found (/usr/local/lib/libboost_unit_test_framework.so)
===> mlpack-3.4.1_1 depends on shared library: libboost_serialization.so - found (/usr/local/lib/libboost_serialization.so)
===> mlpack-3.4.1_1 depends on shared library: libarmadillo.so - found (/usr/local/lib/libarmadillo.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for mlpack-3.4.1_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/mlpack/work/.build
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/bin/gcc9 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/bin/g++9 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- cotire 1.7.10 loaded.
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Found Armadillo: /usr/local/lib/libarmadillo.so (found suitable version "10.1.1", minimum required is "8.400.0")
-- Found StbImage: /usr/local/include/stb
-- Found Ensmallen: /usr/local/include (found suitable version "2.14.2", minimum required is "2.10.0")
-- Found Boost: /usr/local/include (found suitable version "1.72.0", minimum required is "1.58") found components: unit_test_framework serialization
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Regenerating arma_config.hpp.
CMake Warning at CMakeLists.txt:584 (message):
txt2man not found; man pages will not be generated.
-- Julia not found (missing: JULIA_EXECUTABLE) (Required is at least version "0.7.0")
-- Julia not found; not building Julia bindings.
-- Not building Markdown bindings.
-- Not building Python bindings.
-- Go not found (missing: GO_EXECUTABLE) (Required is at least version "1.11.0")
-- Gonum not found (missing: GONUM_VERSION_STRING)
-- Not building Go bindings; the following modules are not available:
- Go
- Gonum
-- R not found (missing: R_EXECUTABLE) (Required is at least version "4.0")
-- Could NOT find R_roxygen2 (missing: R_ROXYGEN2)
-- Could NOT find R_Rcpp (missing: R_RCPP)
-- Could NOT find R_RcppArmadillo (missing: R_RCPPARMADILLO)
-- Could NOT find R_RcppEnsmallen (missing: R_RCPPENSMALLEN)
-- Could NOT find R_BH (missing: R_BH)
-- Could NOT find R_testthat (missing: R_TESTTHAT)
-- Not building R bindings, Following modules are not available:
- R
- roxygen2
- Rcpp
- RcppArmadillo
- RcppEnsmallen
- BH
- testthat
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- CXX target mlpack cotired.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: pkgconf (found version "1.7.3")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/math/mlpack/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for mlpack-3.4.1_1
[1/156] cd /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1 && /usr/local/bin/cmake -D ARMADILLO_INCLUDE_DIR="/usr/local/include" -D OPENMP_FOUND="TRUE" -P CMake/CreateArmaConfigInfo.cmake
[2/156] /bin/sh src/mlpack/CMakeFiles/mlpack_headers.dir/utility.sh 6d0b6441d8a4963b
[3/156] cd /wrkdirs/usr/ports/math/mlpack/work/.build && /usr/local/bin/cmake -P /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/CMake/GeneratePkgConfig.cmake
[4/156] cd /wrkdirs/usr/ports/math/mlpack/work/.build && /usr/local/bin/cmake -DCOTIRE_BUILD_TYPE:STRING=Release -P /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/CMake/cotire.cmake combine /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/mlpack_CXX_cotire.cmake /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.cxx /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src/mlpack/prereqs.hpp
[5/156] cd /wrkdirs/usr/ports/math/mlpack/work/.build && /usr/local/bin/cmake -DCOTIRE_BUILD_TYPE:STRING=Release -P /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/CMake/cotire.cmake combine /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/mlpack_CXX_cotire.cmake /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.hxx /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.cxx
[6/156] cd /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src/mlpack && /usr/local/bin/cmake -DCOTIRE_BUILD_TYPE:STRING=Release -P /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/CMake/cotire.cmake precompile /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/mlpack_CXX_cotire.cmake /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.hxx /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.hxx.gch /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src/mlpack/bindings/cli/print_help.cpp
[7/156] /usr/local/bin/g++9 -DARMA_NO_DEBUG -DBOOST_TEST_DYN_LINK -DHAS_OPENMP -DHAS_STB -DNDEBUG -Dmlpack_EXPORTS -I/wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src -I/usr/local/include/stb -Isrc/mlpack/.. -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -Wall -Wextra -ftemplate-depth=1000 -Wno-unused-function -O3 -fopenmp -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -fPIC -Winvalid-pch -include /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.hxx -std=gnu++11 -MD -MT src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o -MF src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o.d -o src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o -c /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src/mlpack/core/math/columns_to_blocks.cpp
FAILED: src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o
/usr/local/bin/g++9 -DARMA_NO_DEBUG -DBOOST_TEST_DYN_LINK -DHAS_OPENMP -DHAS_STB -DNDEBUG -Dmlpack_EXPORTS -I/wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src -I/usr/local/include/stb -Isrc/mlpack/.. -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -Wall -Wextra -ftemplate-depth=1000 -Wno-unused-function -O3 -fopenmp -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -fPIC -Winvalid-pch -include /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.hxx -std=gnu++11 -MD -MT src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o -MF src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o.d -o src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o -c /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src/mlpack/core/math/columns_to_blocks.cpp
g++9: internal compiler error: Segmentation fault signal terminated program cc1plus
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
[8/156] /usr/local/bin/g++9 -DARMA_NO_DEBUG -DBOOST_TEST_DYN_LINK -DHAS_OPENMP -DHAS_STB -DNDEBUG -Dmlpack_EXPORTS -I/wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src -I/usr/local/include/stb -Isrc/mlpack/.. -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -Wall -Wextra -ftemplate-depth=1000 -Wno-unused-function -O3 -fopenmp -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -fPIC -Winvalid-pch -include /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.hxx -std=gnu++11 -MD -MT src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o -MF src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o.d -o src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o -c /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src/mlpack/core/math/lin_alg.cpp
FAILED: src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o
/usr/local/bin/g++9 -DARMA_NO_DEBUG -DBOOST_TEST_DYN_LINK -DHAS_OPENMP -DHAS_STB -DNDEBUG -Dmlpack_EXPORTS -I/wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src -I/usr/local/include/stb -Isrc/mlpack/.. -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -Wall -Wextra -ftemplate-depth=1000 -Wno-unused-function -O3 -fopenmp -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -fPIC -Winvalid-pch -include /wrkdirs/usr/ports/math/mlpack/work/.build/src/mlpack/cotire/mlpack_CXX_prefix.hxx -std=gnu++11 -MD -MT src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o -MF src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o.d -o src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o -c /wrkdirs/usr/ports/math/mlpack/work/mlpack-3.4.1/src/mlpack/core/math/lin_alg.cpp
g++9: internal compiler error: Segmentation fault signal terminated program cc1plus
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/mlpack
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