[package - 130releng-amd64-default][science/votca] Failed for votca-1.6.3 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Feb 23 19:26:41 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/science/votca/Makefile 558351 2020-12-18 05:40:58Z yuri $
Log URL: http://beefy16.nyi.freebsd.org/data/130releng-amd64-default/566357/logs/votca-1.6.3.log
Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=130releng-amd64-default&build=566357
Log:
=>> Building science/votca
build started at Tue Feb 23 19:22:07 UTC 2021
port directory: /usr/ports/science/votca
package name: votca-1.6.3
building for: FreeBSD 130releng-amd64-default-job-03 13.0-BETA3 FreeBSD 13.0-BETA3 1300139 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/votca/Makefile 558351 2020-12-18 05:40:58Z yuri $
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yuri at FreeBSD.org
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> votca-1.6.3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130releng-amd64-default-job-03] Installing pkg-1.16.3...
[130releng-amd64-default-job-03] Extracting pkg-1.16.3: .......... done
===> votca-1.6.3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of votca-1.6.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-1.6.3 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-1.6.3 for building
=> SHA256 Checksum OK for votca-votca-v1.6.3_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-efaa34c7f148c85493a3d15bf8cc800918d7111f_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-manual-16d27d55248fe7d2f3d78dcb2483f723ba3e38fe_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-tutorials-6819ffd5735cd253d55beffe1be61f0d49e6dd5e_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csgapps-4e40d2b92a5d33db2d750efa1dacdf1d502e7447_GH0.tar.gz.
=> SHA256 Checksum OK for votca-tools-377b8487df371862de793dfe38287f4ce1cbafb8_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-5879ed8d006471d37cc0b19dcbb557eac60cf898_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-tutorials-b4b25d570fef22b8806e2efb2fdcc844ad8acb7e_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-1.6.3 for building
===> Extracting for votca-1.6.3
=> SHA256 Checksum OK for votca-votca-v1.6.3_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-efaa34c7f148c85493a3d15bf8cc800918d7111f_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-manual-16d27d55248fe7d2f3d78dcb2483f723ba3e38fe_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-tutorials-6819ffd5735cd253d55beffe1be61f0d49e6dd5e_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csgapps-4e40d2b92a5d33db2d750efa1dacdf1d502e7447_GH0.tar.gz.
=> SHA256 Checksum OK for votca-tools-377b8487df371862de793dfe38287f4ce1cbafb8_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-5879ed8d006471d37cc0b19dcbb557eac60cf898_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-tutorials-b4b25d570fef22b8806e2efb2fdcc844ad8acb7e_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for votca-1.6.3
===========================================================================
=======================<phase: build-depends >============================
<snip>
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for C++ include stack
-- Looking for C++ include stack - found
-- Looking for C++ include stdexcept
-- Looking for C++ include stdexcept - found
-- Looking for C++ include string
-- Looking for C++ include string - found
-- Looking for C++ include vector
-- Looking for C++ include vector - found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- Found EXPAT: /usr/local/lib/libexpat.so (found version "2.2.10")
-- Performing Test HAVE_AIX
-- Performing Test HAVE_AIX - Failed
-- Found TXT2TAGS: /usr/local/bin/txt2tags
-- Found UnixCommands: /usr/local/bin/bash
-- Found Eigen3: /usr/local/share/eigen3/cmake
-- Found VOTCA_TOOLS:
CMake Warning at csg/CMakeLists.txt:81 (message):
Gromacs-2020 and above have no support for tabulated interactions, that are
needed for coarse-graining (see and comment on
https://gitlab.com/gromacs/gromacs/-/issues/1347)
-- Found GMX: /usr/local/bin/gmx_d
-- Looking for C++ include algorithm
-- Looking for C++ include algorithm - found
-- Looking for C++ include iomanip
-- Looking for C++ include iomanip - found
-- Looking for C++ include numeric
-- Looking for C++ include numeric - found
-- Looking for C++ include cstdlib
-- Looking for C++ include cstdlib - found
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6") found components: C
-- Found LMP: /usr/local/bin/lmp
-- Found VOTCA_CSG:
-- CSG_SHARE is /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/share
-- VOTCA_CSG_DEFAULTS is /wrkdirs/usr/ports/science/votca/work/.build/csg/share/xml/csg_defaults.xml
-- Found LATEX: /usr/local/bin/latex
-- I could not find the biber command.
-- I could not find the pdftops command.
-- LaTeX worked
-- Found VOTCA_CSG:
-- Found OpenMP_C: -fopenmp=libomp (found version "5.0")
-- Found OpenMP_CXX: -fopenmp=libomp (found version "5.0")
-- Found OpenMP: TRUE (found version "5.0")
-- Checking for module 'libxc'
-- Found libxc, version 5.0.0
-- Found LIBXC: /usr/local/lib/libxc.so
-- Found HDF5: /usr/local/lib/libhdf5_cpp.so;/usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8") found components: CXX
CMake Warning at xtp/CMakeLists.txt:49 (message):
HDF5 will be used such that it is compatible with version 1.8.
-- Performing Test COMPILER_SUPPORTS_WNO_DEPRECATED_COPY
-- Performing Test COMPILER_SUPPORTS_WNO_DEPRECATED_COPY - Success
-- Found Boost: /usr/local/include (found suitable version "1.72.0", minimum required is "1.57.0") found components: program_options filesystem system timer chrono
-- Found Eigen3: /usr/local/share/eigen3/cmake
-- Found VOTCA_TOOLS:
-- Found VOTCA_CSG:
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but required is at least "11" (found CLANG_FORMAT_EXECUTABLE-NOTFOUND)
-- The following OPTIONAL packages have been found:
* FFTW3
* GROMACS (required version >= 2021)
* LATEX
* UnixCommands
* PkgConfig
-- The following REQUIRED packages have been found:
* EXPAT
* Threads
* TXT2TAGS
* OpenMP
* LIBXC
* HDF5 (required version >= 1.8)
* Boost (required version >= 1.57.0)
* Eigen3 (required version >= 3.3.0)
-- The following OPTIONAL packages have not been found:
* MKL
* Doxygen
* CLANG_FORMAT (required version >= 11)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
Python_ADDITIONAL_VERSIONS
-- Build files have been written to: /wrkdirs/usr/ports/science/votca/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for votca-1.6.3
[1/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools && /usr/local/bin/cmake -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -DGIT_EXECUTABLE="" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/CMakeModules/gitversion.cmake
[2/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/akimaspline.cc
[3/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/application.cc
[4/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/calculator.cc
[5/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/colors.cc
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std::bind2nd(std::multiplies<double>(), norm));
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/usr/include/c++/v1/functional:1093:1: note: 'bind2nd<std::__1::multiplies<double>, double>' has been explicitly marked deprecated here
_LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY
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# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
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/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
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1 warning generated.
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/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/rangeparser.cc:34:36: warning: 'bind2nd<std::__1::equal_to<char>, char>' is deprecated [-Wdeprecated-declarations]
str.begin(), str.end(), std::bind2nd(std::equal_to<char>(), ' '));
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/usr/include/c++/v1/functional:1093:1: note: 'bind2nd<std::__1::equal_to<char>, char>' has been explicitly marked deprecated here
_LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY
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/usr/include/c++/v1/__config:985:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
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/usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
1 warning generated.
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[32/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/reducedgraph.cc
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[35/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/thread.cc
[36/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/tokenizer.cc
[37/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/version.cc
[38/472] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -shared -Wl,-soname,libvotca_tools.so.6 -o tools/src/libtools/libvotca_tools.so.6 tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/elements
.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graph.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphalgorithm.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphdistvisitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphnode.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/property.cc.o
tools/src/libtools/CMakeFiles/votca_tools.d!
ir/propertyiomanipulator.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/libboost_program_options.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libexpat.so -lm /usr/local/lib/libfftw3.so -pthread && :
[39/472] /usr/local/bin/cmake -E cmake_symlink_library tools/src/libtools/libvotca_tools.so.6 tools/src/libtools/libvotca_tools.so.6 tools/src/libtools/libvotca_tools.so && :
[40/472] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++14 -MD -MT tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -MF tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o.d -o tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/tools/votca_property.cc
[41/472] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -o tools/src/tools/votca_property -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: tools/src/libtools/libvotca_tools.so.6 /usr/local/lib/libboost_program_options.so && :
[42/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/src/tools && /wrkdirs/usr/ports/science/votca/work/.build/tools/src/tools/votca_property --man > votca_property.man
[43/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts && /usr/local/bin/cmake -DINPUT="votca_compare.out" -DOUTPUT="votca_compare" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/CMakeModules/gitscript.cmake
[44/472] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg && /usr/local/bin/cmake -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -DGIT_EXECUTABLE="" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/CMakeModules/gitversion.cmake
[45/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/beadlist.cc
[46/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/beadmotif.cc
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[54/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/exclusionlist.cc
[55/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/imcio.cc
[56/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc
FAILED: csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o
/usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc
/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc:83:13: error: use of undeclared identifier 'bind2nd'
bind2nd(multiplies<double>(), norm));
^
/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc:92:15: error: use of undeclared identifier 'bind2nd'
bind2nd(multiplies<double>(), norm));
^
2 errors generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/votca
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