[exp - 122amd64-default-build-as-user][databases/py-tiledb] Failed for py37-tiledb-0.7.6 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Feb 2 10:07:25 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident: $FreeBSD: head/databases/py-tiledb/Makefile 563319 2021-01-30 12:23:19Z sunpoet $
Log URL: http://package19.nyi.freebsd.org/data/122amd64-default-build-as-user/563539/logs/py37-tiledb-0.7.6.log
Build URL: http://package19.nyi.freebsd.org/build.html?mastername=122amd64-default-build-as-user&build=563539
Log:
=>> Building databases/py-tiledb
build started at Tue Feb 2 10:05:46 UTC 2021
port directory: /usr/ports/databases/py-tiledb
package name: py37-tiledb-0.7.6
building for: FreeBSD 122amd64-default-build-as-user-job-08 12.2-RELEASE-p3 FreeBSD 12.2-RELEASE-p3 amd64
maintained by: sunpoet at FreeBSD.org
Makefile ident: $FreeBSD: head/databases/py-tiledb/Makefile 563319 2021-01-30 12:23:19Z sunpoet $
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py37-tiledb-0.7.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.2.txz
[122amd64-default-build-as-user-job-08] Installing pkg-1.16.2...
[122amd64-default-build-as-user-job-08] Extracting pkg-1.16.2: .......... done
===> py37-tiledb-0.7.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py37-tiledb-0.7.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
=> tiledb-0.7.6.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://files.pythonhosted.org/packages/source/t/tiledb/tiledb-0.7.6.tar.gz
tiledb-0.7.6.tar.gz 179 kB 33 MBps 00s
===> Fetching all distfiles required by py37-tiledb-0.7.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py37-tiledb-0.7.6 for building
=> SHA256 Checksum OK for tiledb-0.7.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py37-tiledb-0.7.6 for building
===> Extracting for py37-tiledb-0.7.6
=> SHA256 Checksum OK for tiledb-0.7.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py37-tiledb-0.7.6
===========================================================================
=======================<phase: build-depends >============================
===> py37-tiledb-0.7.6 depends on package: py37-pybind11>=0 - not found
===> Installing existing package /packages/All/py37-pybind11-2.6.1_1.txz
[122amd64-default-build-as-user-job-08] Installing py37-pybind11-2.6.1_1...
[122amd64-default-build-as-user-job-08] `-- Installing py37-setuptools-44.0.0...
[122amd64-default-build-as-user-job-08] | `-- Installing python37-3.7.9_1...
[122amd64-default-build-as-user-job-08] | | `-- Installing gettext-runtime-0.21...
[122amd64-default-build-as-user-job-08] | | `-- Installing indexinfo-0.3.1...
[122amd64-default-build-as-user-job-08] | | `-- Extracting indexinfo-0.3.1: .... done
[122amd64-default-build-as-user-job-08] | | `-- Extracting gettext-runtime-0.21: .......... done
[122amd64-default-build-as-user-job-08] | | `-- Installing libffi-3.3_1...
[122amd64-default-build-as-user-job-08] | | `-- Extracting libffi-3.3_1: .......... done
[122amd64-default-build-as-user-job-08] | | `-- Installing readline-8.1.0...
[122amd64-default-build-as-user-job-08] | | `-- Extracting readline-8.1.0: .......... done
[122amd64-default-build-as-user-job-08] | `-- Extracting python37-3.7.9_1: .......... done
[122amd64-default-build-as-user-job-08] `-- Extracting py37-setuptools-44.0.0: .......... done
[122amd64-default-build-as-user-job-08] Extracting py37-pybind11-2.6.1_1: .......... done
=====
Message from python37-3.7.9_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py37-gdbm databases/py-gdbm at py37
py37-sqlite3 databases/py-sqlite3 at py37
py37-tkinter x11-toolkits/py-tkinter at py37
===> py37-tiledb-0.7.6 depends on package: py37-pybind11>=0 - found
===> Returning to build of py37-tiledb-0.7.6
===> py37-tiledb-0.7.6 depends on package: py37-setuptools_scm>=1.5.4 - not found
===> Installing existing package /packages/All/py37-setuptools_scm-4.1.2_1.txz
[122amd64-default-build-as-user-job-08] Installing py37-setuptools_scm-4.1.2_1...
[122amd64-default-build-as-user-job-08] `-- Installing py37-toml-0.10.2...
[122amd64-default-build-as-user-job-08] `-- Extracting py37-toml-0.10.2: .......... done
[122amd64-default-build-as-user-job-08] Extracting py37-setuptools_scm-4.1.2_1: .......... done
===> py37-tiledb-0.7.6 depends on package: py37-setuptools_scm>=1.5.4 - found
===> Returning to build of py37-tiledb-0.7.6
===> py37-tiledb-0.7.6 depends on package: py37-wheel>=0.30 - not found
===> Installing existing package /packages/All/py37-wheel-0.30.0_1.txz
[122amd64-default-build-as-user-job-08] Installing py37-wheel-0.30.0_1...
[122amd64-default-build-as-user-job-08] Extracting py37-wheel-0.30.0_1: .......... done
===> py37-tiledb-0.7.6 depends on package: py37-wheel>=0.30 - found
===> Returning to build of py37-tiledb-0.7.6
===> py37-tiledb-0.7.6 depends on package: py37-numpy>=1.16,1<1.20,1 - not found
===> Installing existing package /packages/All/py37-numpy-1.16.6,1.txz
[122amd64-default-build-as-user-job-08] Installing py37-numpy-1.16.6,1...
[122amd64-default-build-as-user-job-08] `-- Installing gcc10-10.2.0...
[122amd64-default-build-as-user-job-08] | `-- Installing binutils-2.33.1_4,1...
[122amd64-default-build-as-user-job-08] | `-- Extracting binutils-2.33.1_4,1: .......... done
[122amd64-default-build-as-user-job-08] | `-- Installing gmp-6.2.1...
[122amd64-default-build-as-user-job-08] | `-- Extracting gmp-6.2.1: .......... done
[122amd64-default-build-as-user-job-08] | `-- Installing mpc-1.1.0_2...
[122amd64-default-build-as-user-job-08] | | `-- Installing mpfr-4.1.0...
[122amd64-default-build-as-user-job-08] | | `-- Extracting mpfr-4.1.0: .......... done
[122amd64-default-build-as-user-job-08] | `-- Extracting mpc-1.1.0_2: ......... done
[122amd64-default-build-as-user-job-08] `-- Extracting gcc10-10.2.0: .......... done
[122amd64-default-build-as-user-job-08] `-- Installing openblas-0.3.12,1...
[122amd64-default-build-as-user-job-08] `-- Extracting openblas-0.3.12,1: .......... done
[122amd64-default-build-as-user-job-08] `-- Installing suitesparse-5.8.1...
[122amd64-default-build-as-user-job-08] | `-- Installing metis-5.1.0_8...
[122amd64-default-build-as-user-job-08] | `-- Extracting metis-5.1.0_8: .......... done
[122amd64-default-build-as-user-job-08] | `-- Installing tbb-2020.3_1...
[122amd64-default-build-as-user-job-08] | `-- Extracting tbb-2020.3_1: .......... done
[122amd64-default-build-as-user-job-08] `-- Extracting suitesparse-5.8.1: .......... done
[122amd64-default-build-as-user-job-08] Extracting py37-numpy-1.16.6,1: .......... done
=====
Message from gcc10-10.2.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc10
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from metis-5.1.0_8:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> py37-tiledb-0.7.6 depends on package: py37-numpy>=1.16,1<1.20,1 - found
===> Returning to build of py37-tiledb-0.7.6
===> py37-tiledb-0.7.6 depends on package: py37-setuptools>0 - found
===> py37-tiledb-0.7.6 depends on file: /usr/local/bin/python3.7 - found
===> py37-tiledb-0.7.6 depends on package: tiledb>=2.1.6 - not found
===> Installing existing package /packages/All/tiledb-2.2.2.txz
[122amd64-default-build-as-user-job-08] Installing tiledb-2.2.2...
[122amd64-default-build-as-user-job-08] `-- Installing catch-2.13.3...
[122amd64-default-build-as-user-job-08] `-- Extracting catch-2.13.3: .......... done
[122amd64-default-build-as-user-job-08] `-- Installing clipp-1.2.3...
[122amd64-default-build-as-user-job-08] `-- Extracting clipp-1.2.3: .... done
[122amd64-default-build-as-user-job-08] `-- Installing libfmt-7.1.3...
[122amd64-default-build-as-user-job-08] `-- Extracting libfmt-7.1.3: .......... done
[122amd64-default-build-as-user-job-08] `-- Installing liblz4-1.9.3,1...
[122amd64-default-build-as-user-job-08] `-- Extracting liblz4-1.9.3,1: .......... done
[122amd64-default-build-as-user-job-08] `-- Installing spdlog-1.8.2...
[122amd64-default-build-as-user-job-08] `-- Extracting spdlog-1.8.2: .......... done
[122amd64-default-build-as-user-job-08] `-- Installing zstd-1.4.8...
[122amd64-default-build-as-user-job-08] `-- Extracting zstd-1.4.8: .......... done
[122amd64-default-build-as-user-job-08] Extracting tiledb-2.2.2: .......... done
===> py37-tiledb-0.7.6 depends on package: tiledb>=2.1.6 - found
===> Returning to build of py37-tiledb-0.7.6
===> py37-tiledb-0.7.6 depends on executable: cython-3.7 - not found
===> Installing existing package /packages/All/py37-cython-0.29.21.txz
[122amd64-default-build-as-user-job-08] Installing py37-cython-0.29.21...
[122amd64-default-build-as-user-job-08] Extracting py37-cython-0.29.21: .......... done
===> py37-tiledb-0.7.6 depends on executable: cython-3.7 - found
===> Returning to build of py37-tiledb-0.7.6
===> py37-tiledb-0.7.6 depends on package: py37-setuptools>0 - found
===> py37-tiledb-0.7.6 depends on file: /usr/local/bin/python3.7 - found
===========================================================================
=======================<phase: lib-depends >============================
===> py37-tiledb-0.7.6 depends on shared library: libtiledb.so - found (/usr/local/lib/libtiledb.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for py37-tiledb-0.7.6
setup.py sys.argv is: ['setup.py', 'config']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'libtiledb.so'
running config
===========================================================================
=======================<phase: build >============================
===> Building for py37-tiledb-0.7.6
setup.py sys.argv is: ['setup.py', 'build']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'libtiledb.so'
running build
running build_py
creating build
creating build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7
creating build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
copying tiledb/metadata.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
copying tiledb/multirange_indexing.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
copying tiledb/__init__.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
copying tiledb/version.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
copying tiledb/dataframe_.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
copying tiledb/array.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
copying tiledb/highlevel.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
creating build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/all.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_util.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_libtiledb.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/check_csv_dir.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/common.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/__init__.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_dask.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_domain_index.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_multi_index.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_examples.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_core.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_compat.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_metadata.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
copying tiledb/tests/test_pandas_dataframe.py -> build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/tests
running build_ext
ext_modules: [<setuptools.extension.Extension('tiledb.libtiledb') at 0x8022b4b50>, <setuptools.extension.Extension('tiledb.core') at 0x8024522d0>]
tiledb_ext: <setuptools.extension.Extension('tiledb.libtiledb') at 0x8022b4b50>
core_ext: <setuptools.extension.Extension('tiledb.core') at 0x8024522d0>
tiledb_ext.library_dirs: []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'libtiledb.so'
prefix_dir: <setuptools.extension.Extension('tiledb.core') at 0x8024522d0>
do_install: False
cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp
building 'tiledb.libtiledb' extension
creating build/temp.freebsd-12.2-RELEASE-p3-amd64-3.7
creating build/temp.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/libtiledb.o -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wno-deprecated-declarations
In file included from tiledb/libtiledb.cpp:633:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
c++ -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/libtiledb.o -L/usr/local/lib -ltiledb -lpython3.7m -o build/lib.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/libtiledb.so
building 'tiledb.core' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c tiledb/core.cc -o build/temp.freebsd-12.2-RELEASE-p3-amd64-3.7/tiledb/core.o -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wno-deprecated-declarations
tiledb/core.cc:943:33: error: no matching constructor for initialization of 'tiledb::arrow::ArrowAdapter'
tiledb::arrow::ArrowAdapter adapter(query_);
^ ~~~~~~
/usr/local/include/tiledb/arrowio:55:7: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'shared_ptr<tiledb::Query>' to 'const tiledb::arrow::ArrowAdapter' for 1st argument
class ArrowAdapter {
^
/usr/local/include/tiledb/arrow_io_impl.h:763:15: note: candidate constructor not viable: requires 2 arguments, but 1 was provided
ArrowAdapter::ArrowAdapter(Context* const ctx, Query* const query)
^
tiledb/core.cc:960:33: error: no matching constructor for initialization of 'tiledb::arrow::ArrowAdapter'
tiledb::arrow::ArrowAdapter adapter(query_);
^ ~~~~~~
/usr/local/include/tiledb/arrowio:55:7: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'shared_ptr<tiledb::Query>' to 'const tiledb::arrow::ArrowAdapter' for 1st argument
class ArrowAdapter {
^
/usr/local/include/tiledb/arrow_io_impl.h:763:15: note: candidate constructor not viable: requires 2 arguments, but 1 was provided
ArrowAdapter::ArrowAdapter(Context* const ctx, Query* const query)
^
2 errors generated.
/usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/databases/py-tiledb/work-py37/tiledb-0.7.6/tiledb/libtiledb.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: tiledb/libtiledb.pyx:5580:0: Overriding cdef method with def method.
error: command 'cc' failed with exit status 1
*** Error code 1
Stop.
make: stopped in /usr/ports/databases/py-tiledb
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