[package - 121arm64-quarterly][science/lammps] Failed for lammps-2020.12.24_3 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sat Jan 30 01:55:15 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: branches/2021Q1/science/lammps/Makefile 559190 2020-12-24 21:05:44Z yuri $
Log URL: http://ampere1.nyi.freebsd.org/data/121arm64-quarterly/563271/logs/lammps-2020.12.24_3.log
Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=121arm64-quarterly&build=563271
Log:
=>> Building science/lammps
build started at Sat Jan 30 01:54:24 UTC 2021
port directory: /usr/ports/science/lammps
package name: lammps-2020.12.24_3
building for: FreeBSD 121arm64-quarterly-job-07 12.1-RELEASE FreeBSD 12.1-RELEASE arm64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2021Q1/science/lammps/Makefile 559190 2020-12-24 21:05:44Z yuri $
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===> The following configuration options are available for lammps-2020.12.24_3:
EXCEPTIONS=on: Enable the use of C++ exceptions
FFMPEG=on: FFmpeg support (WMA, AIFF, AC3, APE...)
GZIP=on: Enable GZIP support
JPEG=on: JPEG image format support
PNG=on: PNG image format support
====> Enable parallelizations:
MPI=on: MPI (Message Passing Interface) support
OPENMP=on: Parallel processing support via OpenMP
====> Enable packages:
H5MD=on: USER-H5MD package based on libhdf5
KIM=on: KIM package based on the OpenKim library/repository
KOKKOS=on: kokkos package based on the libkokkos library
LATTE=on: latte package based on the liblatte library
PLUMED=on: plumed package based on the plumed library
VORONOI=on: voro++, Voronoi tessellation package
VTK=off: USER-VTK package based on the external vtk package
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
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--End CONFIGURE_ARGS--
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ing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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--PLIST_SUB--
EXCEPTIONS="" NO_EXCEPTIONS="@comment " FFMPEG="" NO_FFMPEG="@comment " GZIP="" NO_GZIP="@comment " H5MD="" NO_H5MD="@comment " JPEG="" NO_JPEG="@comment " KIM="" NO_KIM="@comment " KOKKOS="" NO_KOKKOS="@comment " LATTE="" NO_LATTE="@comment " MPI="" NO_MPI="@comment " OPENMP="" NO_OPENMP="@comment " PLUMED="" NO_PLUMED="@comment " PNG="" NO_PNG="@comment " VORONOI="" NO_VORONOI="@comment " VTK="@comment " NO_VTK="" CMAKE_BUILD_TYPE="release" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/lammps" EXAMPLESDIR="share/examples/lammps" DATADIR="share/lammps" WWWDIR="www/lammps" ETCDIR="etc/lammps"
--End PLIST_SUB--
--SUB_LIST--
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umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> lammps-2020.12.24_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.1.txz
[121arm64-quarterly-job-07] Installing pkg-1.16.1...
[121arm64-quarterly-job-07] Extracting pkg-1.16.1: .......... done
===> lammps-2020.12.24_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of lammps-2020.12.24_3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-2020.12.24_3 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-2020.12.24_3 for building
=> SHA256 Checksum OK for lammps-lammps-2020.12.24-patch_24Dec2020_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-2020.12.24_3 for building
===> Extracting for lammps-2020.12.24_3
=> SHA256 Checksum OK for lammps-lammps-2020.12.24-patch_24Dec2020_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for lammps-2020.12.24_3
===> Applying FreeBSD patches for lammps-2020.12.24_3 from /usr/ports/science/lammps/files
===========================================================================
=======================<phase: build-depends >============================
===> lammps-2020.12.24_3 depends on executable: ffmpeg - not found
===> Installing existing package /packages/All/ffmpeg-4.3.1_9,1.txz
[121arm64-quarterly-job-07] Installing ffmpeg-4.3.1_9,1...
<snip>
[121arm64-quarterly-job-07] | `-- Installing libXdamage-1.1.5...
[121arm64-quarterly-job-07] | `-- Extracting libXdamage-1.1.5: ......... done
[121arm64-quarterly-job-07] | `-- Installing libXrandr-1.5.2...
[121arm64-quarterly-job-07] | | `-- Installing libXrender-0.9.10_2...
[121arm64-quarterly-job-07] | | `-- Extracting libXrender-0.9.10_2: .......... done
[121arm64-quarterly-job-07] | `-- Extracting libXrandr-1.5.2: .......... done
[121arm64-quarterly-job-07] | `-- Installing libXxf86vm-1.1.4_3...
[121arm64-quarterly-job-07] | `-- Extracting libXxf86vm-1.1.4_3: .......... done
[121arm64-quarterly-job-07] | `-- Installing libunwind-20200331_1...
[121arm64-quarterly-job-07] | `-- Extracting libunwind-20200331_1: .......... done
[121arm64-quarterly-job-07] | `-- Installing libxshmfence-1.3...
[121arm64-quarterly-job-07] | `-- Extracting libxshmfence-1.3: ......... done
[121arm64-quarterly-job-07] | `-- Installing zstd-1.4.5_1...
[121arm64-quarterly-job-07] | `-- Extracting zstd-1.4.5_1: .......... done
[121arm64-quarterly-job-07] `-- Extracting mesa-libs-20.2.3: .......... done
[121arm64-quarterly-job-07] `-- Installing mpfr-4.1.0...
[121arm64-quarterly-job-07] `-- Extracting mpfr-4.1.0: .......... done
[121arm64-quarterly-job-07] `-- Installing openblas-0.3.12,1...
[121arm64-quarterly-job-07] | `-- Installing gcc9-9.3.0_1...
[121arm64-quarterly-job-07] | | `-- Installing binutils-2.33.1_4,1...
[121arm64-quarterly-job-07] | | `-- Extracting binutils-2.33.1_4,1: .......... done
[121arm64-quarterly-job-07] | | `-- Installing mpc-1.1.0_2...
[121arm64-quarterly-job-07] | | `-- Extracting mpc-1.1.0_2: ......... done
[121arm64-quarterly-job-07] | `-- Extracting gcc9-9.3.0_1: .......... done
[121arm64-quarterly-job-07] `-- Extracting openblas-0.3.12,1: .......... done
[121arm64-quarterly-job-07] `-- Installing suitesparse-5.8.1...
[121arm64-quarterly-job-07] | `-- Installing metis-5.1.0_8...
[121arm64-quarterly-job-07] | `-- Extracting metis-5.1.0_8: .......... done
[121arm64-quarterly-job-07] | `-- Installing tbb-2020.3_1...
[121arm64-quarterly-job-07] | `-- Extracting tbb-2020.3_1: .......... done
[121arm64-quarterly-job-07] `-- Extracting suitesparse-5.8.1: .......... done
[121arm64-quarterly-job-07] `-- Installing superlu-5.2.2...
[121arm64-quarterly-job-07] | `-- Installing blas-3.5.0_6...
[121arm64-quarterly-job-07] | `-- Extracting blas-3.5.0_6: ....... done
[121arm64-quarterly-job-07] | `-- Installing lapack-3.5.0_8...
[121arm64-quarterly-job-07] | `-- Extracting lapack-3.5.0_8: .......... done
[121arm64-quarterly-job-07] `-- Extracting superlu-5.2.2: .......... done
[121arm64-quarterly-job-07] Extracting eigen-3.3.8: .......... done
=====
Message from boost-libs-1.72.0_3:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
=====
Message from binutils-2.33.1_4,1:
--
===> NOTICE:
The binutils port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
=====
Message from gcc9-9.3.0_1:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc9
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from metis-5.1.0_8:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> lammps-2020.12.24_3 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on executable: gfortran9 - found
===> lammps-2020.12.24_3 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-1.7.3,1.txz
[121arm64-quarterly-job-07] Installing pkgconf-1.7.3,1...
[121arm64-quarterly-job-07] Extracting pkgconf-1.7.3,1: .......... done
===> lammps-2020.12.24_3 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> lammps-2020.12.24_3 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===> lammps-2020.12.24_3 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.10.6,1.txz
[121arm64-quarterly-job-07] Installing hdf5-1.10.6,1...
[121arm64-quarterly-job-07] `-- Installing hdf-szip-2.1.1...
[121arm64-quarterly-job-07] `-- Extracting hdf-szip-2.1.1: .......... done
[121arm64-quarterly-job-07] Extracting hdf5-1.10.6,1: .......... done
===> lammps-2020.12.24_3 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===> lammps-2020.12.24_3 depends on shared library: libkim-api.so - not found
===> Installing existing package /packages/All/kim-api-2.2.1.txz
[121arm64-quarterly-job-07] Installing kim-api-2.2.1...
[121arm64-quarterly-job-07] Extracting kim-api-2.2.1: .......... done
===> lammps-2020.12.24_3 depends on shared library: libkim-api.so - found (/usr/local/lib/libkim-api.so)
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so)
===> lammps-2020.12.24_3 depends on shared library: libkokkoscore.so - not found
===> Installing existing package /packages/All/kokkos-3.3.00.txz
[121arm64-quarterly-job-07] Installing kokkos-3.3.00...
[121arm64-quarterly-job-07] Extracting kokkos-3.3.00: .......... done
===> lammps-2020.12.24_3 depends on shared library: libkokkoscore.so - found (/usr/local/lib/libkokkoscore.so)
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on shared library: liblatte.so - not found
===> Installing existing package /packages/All/latte-1.2.2.txz
[121arm64-quarterly-job-07] Installing latte-1.2.2...
[121arm64-quarterly-job-07] `-- Installing openmpi-4.0.5...
[121arm64-quarterly-job-07] | `-- Installing hwloc-1.11.13...
[121arm64-quarterly-job-07] | `-- Extracting hwloc-1.11.13: .......... done
[121arm64-quarterly-job-07] | `-- Installing libevent-2.1.12...
[121arm64-quarterly-job-07] | `-- Extracting libevent-2.1.12: .......... done
[121arm64-quarterly-job-07] | `-- Installing libltdl-2.4.6...
[121arm64-quarterly-job-07] | `-- Extracting libltdl-2.4.6: .......... done
[121arm64-quarterly-job-07] | `-- Installing munge-0.5.14_1...
[121arm64-quarterly-job-07] | | `-- Installing perl5-5.32.1_1...
[121arm64-quarterly-job-07] | | `-- Extracting perl5-5.32.1_1: .......... done
[121arm64-quarterly-job-07] | `-- Extracting munge-0.5.14_1: ......... done
[121arm64-quarterly-job-07] | `-- Installing slurm-wlm-20.02.1_4...
[121arm64-quarterly-job-07] | | `-- Installing json-c-0.15_1...
[121arm64-quarterly-job-07] | | `-- Extracting json-c-0.15_1: .......... done
[121arm64-quarterly-job-07] | | `-- Installing libsysinfo-0.0.3_2...
[121arm64-quarterly-job-07] | | `-- Extracting libsysinfo-0.0.3_2: ......... done
[121arm64-quarterly-job-07] | | `-- Installing lua52-5.2.4...
[121arm64-quarterly-job-07] | | `-- Installing libedit-3.1.20191231,1...
[121arm64-quarterly-job-07] | | `-- Extracting libedit-3.1.20191231,1: .......... done
[121arm64-quarterly-job-07] | | `-- Extracting lua52-5.2.4: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[121arm64-quarterly-job-07] | `-- Extracting slurm-wlm-20.02.1_4: .......... done
[121arm64-quarterly-job-07] `-- Extracting openmpi-4.0.5: .......... done
[121arm64-quarterly-job-07] Extracting latte-1.2.2: ......... done
===> lammps-2020.12.24_3 depends on shared library: liblatte.so - found (/usr/local/lib/liblatte.so)
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so)
===> lammps-2020.12.24_3 depends on shared library: libplumed.so - not found
===> Installing existing package /packages/All/plumed-2.7.0.txz
[121arm64-quarterly-job-07] Installing plumed-2.7.0...
[121arm64-quarterly-job-07] Extracting plumed-2.7.0: .......... done
===> lammps-2020.12.24_3 depends on shared library: libplumed.so - found (/usr/local/lib/libplumed.so)
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so)
===> lammps-2020.12.24_3 depends on shared library: libvoro++.so - not found
===> Installing existing package /packages/All/voro++-0.4.6_1.txz
[121arm64-quarterly-job-07] Installing voro++-0.4.6_1...
[121arm64-quarterly-job-07] Extracting voro++-0.4.6_1: .......... done
===> lammps-2020.12.24_3 depends on shared library: libvoro++.so - found (/usr/local/lib/libvoro++.so)
===> Returning to build of lammps-2020.12.24_3
===> lammps-2020.12.24_3 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> lammps-2020.12.24_3 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for lammps-2020.12.24_3
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/lammps/work/.build
-- The CXX compiler identification is Clang 8.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Running check for auto-generated files from make-based build system
-- Found MPI_CXX: /usr/local/mpi/openmpi/lib/libmpi_cxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
CMake Error at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:218 (message):
Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:582 (_FPHSA_FAILURE_MESSAGE)
/usr/local/share/cmake/Modules/FindOpenMP.cmake:580 (find_package_handle_standard_args)
CMakeLists.txt:216 (find_package)
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/lammps/work/.build/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/science/lammps/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/lammps
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