[package - 121arm64-quarterly][science/lammps] Failed for lammps-2020.09.18 in configure

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Thu Dec 24 21:03:17 UTC 2020


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident:          $FreeBSD: branches/2020Q4/science/lammps/Makefile 548937 2020-09-19 03:35:55Z yuri $
Log URL:        http://ampere1.nyi.freebsd.org/data/121arm64-quarterly/559008/logs/lammps-2020.09.18.log
Build URL:      http://ampere1.nyi.freebsd.org/build.html?mastername=121arm64-quarterly&build=559008
Log:

=>> Building science/lammps
build started at Thu Dec 24 21:02:33 UTC 2020
port directory: /usr/ports/science/lammps
package name: lammps-2020.09.18
building for: FreeBSD 121arm64-quarterly-job-16 12.1-RELEASE FreeBSD 12.1-RELEASE arm64
maintained by: yuri at FreeBSD.org
Makefile ident:      $FreeBSD: branches/2020Q4/science/lammps/Makefile 548937 2020-09-19 03:35:55Z yuri $
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
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Job Id: 16

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---Begin OPTIONS List---
===> The following configuration options are available for lammps-2020.09.18:
     EXCEPTIONS=on: Enable the use of C++ exceptions
     FFMPEG=on: FFmpeg support (WMA, AIFF, AC3, APE...)
     GZIP=on: Enable GZIP support
     JPEG=on: JPEG image format support
     PNG=on: PNG image format support
====> Enable parallelizations:
     MPI=on: MPI (Message Passing Interface) support
     OPENMP=on: Parallel processing support via OpenMP
====> Enable packages:
     H5MD=on: USER-H5MD package based on libhdf5
     KIM=on: KIM package based on the OpenKim library/repository
     KOKKOS=on: kokkos package based on the libkokkos library
     LATTE=on: latte package based on the liblatte library
     PLUMED=on: plumed package based on the plumed library
     VORONOI=on: voro++, Voronoi tessellation package
     VTK=off: USER-VTK package based on the external vtk package
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

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F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/lammps/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/lammps/work  HOME=/wrkdirs/usr/ports/science/lammps/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/lammps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
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--End MAKE_ENV--

--PLIST_SUB--
EXCEPTIONS="" NO_EXCEPTIONS="@comment " FFMPEG="" NO_FFMPEG="@comment " GZIP="" NO_GZIP="@comment " H5MD="" NO_H5MD="@comment " JPEG="" NO_JPEG="@comment " KIM="" NO_KIM="@comment " KOKKOS="" NO_KOKKOS="@comment " LATTE="" NO_LATTE="@comment " MPI="" NO_MPI="@comment " OPENMP="" NO_OPENMP="@comment " PLUMED="" NO_PLUMED="@comment " PNG="" NO_PNG="@comment " VORONOI="" NO_VORONOI="@comment " VTK="@comment " NO_VTK="" CMAKE_BUILD_TYPE="release" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/lammps"  EXAMPLESDIR="share/examples/lammps"  DATADIR="share/lammps"  WWWDIR="www/lammps"  ETCDIR="etc/lammps"
--End PLIST_SUB--

--SUB_LIST--
EXCEPTIONS="" NO_EXCEPTIONS="@comment " FFMPEG="" NO_FFMPEG="@comment " GZIP="" NO_GZIP="@comment " H5MD="" NO_H5MD="@comment " JPEG="" NO_JPEG="@comment " KIM="" NO_KIM="@comment " KOKKOS="" NO_KOKKOS="@comment " LATTE="" NO_LATTE="@comment " MPI="" NO_MPI="@comment " OPENMP="" NO_OPENMP="@comment " PLUMED="" NO_PLUMED="@comment " PNG="" NO_PNG="@comment " VORONOI="" NO_VORONOI="@comment " VTK="@comment " NO_VTK="" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/lammps DOCSDIR=/usr/local/share/doc/lammps EXAMPLESDIR=/usr/local/share/examples/lammps  WWWDIR=/usr/local/www/lammps ETCDIR=/usr/local/etc/lammps
--End SUB_LIST--

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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   lammps-2020.09.18 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.15.10.txz
[121arm64-quarterly-job-16] Installing pkg-1.15.10...
[121arm64-quarterly-job-16] Extracting pkg-1.15.10: .......... done
===>   lammps-2020.09.18 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of lammps-2020.09.18
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-2020.09.18 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-2020.09.18 for building
=> SHA256 Checksum OK for lammps-lammps-2020.09.18-patch_18Sep2020_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-2020.09.18 for building
===>  Extracting for lammps-2020.09.18
=> SHA256 Checksum OK for lammps-lammps-2020.09.18-patch_18Sep2020_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for lammps-2020.09.18
===>  Applying FreeBSD patches for lammps-2020.09.18 from /usr/ports/science/lammps/files
===========================================================================
=======================<phase: build-depends  >============================
===>   lammps-2020.09.18 depends on executable: ffmpeg - not found
===>   Installing existing package /packages/All/ffmpeg-4.3.1_4,1.txz
[121arm64-quarterly-job-16] Installing ffmpeg-4.3.1_4,1...
<snip>
=====
Message from opencv-core-3.4.1_36:

--
===>   NOTICE:

The opencv-core port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   lammps-2020.09.18 depends on executable: ffmpeg - found
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.18.3.txz
[121arm64-quarterly-job-16] Installing cmake-3.18.3...
[121arm64-quarterly-job-16] `-- Installing curl-7.74.0...
[121arm64-quarterly-job-16] |   `-- Installing libnghttp2-1.41.0...
[121arm64-quarterly-job-16] |   `-- Extracting libnghttp2-1.41.0: .......... done
[121arm64-quarterly-job-16] `-- Extracting curl-7.74.0: .......... done
[121arm64-quarterly-job-16] `-- Installing jsoncpp-1.9.4...
[121arm64-quarterly-job-16] `-- Extracting jsoncpp-1.9.4: .......... done
[121arm64-quarterly-job-16] `-- Installing libarchive-3.4.3,1...
[121arm64-quarterly-job-16] |   `-- Installing liblz4-1.9.2_1,1...
[121arm64-quarterly-job-16] |   `-- Extracting liblz4-1.9.2_1,1: .......... done
[121arm64-quarterly-job-16] |   `-- Installing lzo2-2.10_1...
[121arm64-quarterly-job-16] |   `-- Extracting lzo2-2.10_1: .......... done
[121arm64-quarterly-job-16] `-- Extracting libarchive-3.4.3,1: .......... done
[121arm64-quarterly-job-16] `-- Installing libuv-1.40.0...
[121arm64-quarterly-job-16] `-- Extracting libuv-1.40.0: .......... done
[121arm64-quarterly-job-16] `-- Installing rhash-1.3.9...
[121arm64-quarterly-job-16] `-- Extracting rhash-1.3.9: .......... done
[121arm64-quarterly-job-16] Extracting cmake-3.18.3: .......... done
===>   lammps-2020.09.18 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found
===>   Installing existing package /packages/All/eigen-3.3.7.txz
[121arm64-quarterly-job-16] Installing eigen-3.3.7...
[121arm64-quarterly-job-16] Extracting eigen-3.3.7: .......... done
===>   lammps-2020.09.18 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on executable: gfortran9 - not found
===>   Installing existing package /packages/All/gcc9-9.3.0_1.txz
[121arm64-quarterly-job-16] Installing gcc9-9.3.0_1...
[121arm64-quarterly-job-16] `-- Installing binutils-2.33.1_4,1...
[121arm64-quarterly-job-16] `-- Extracting binutils-2.33.1_4,1: .......... done
[121arm64-quarterly-job-16] `-- Installing mpc-1.1.0_2...
[121arm64-quarterly-job-16] |   `-- Installing mpfr-4.1.0...
[121arm64-quarterly-job-16] |   `-- Extracting mpfr-4.1.0: .......... done
[121arm64-quarterly-job-16] `-- Extracting mpc-1.1.0_2: ......... done
[121arm64-quarterly-job-16] Extracting gcc9-9.3.0_1: .......... done
=====
Message from binutils-2.33.1_4,1:

--
===>   NOTICE:

The binutils port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
=====
Message from gcc9-9.3.0_1:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc9

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   lammps-2020.09.18 depends on executable: gfortran9 - found
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on package: pkgconf>=1.3.0_1 - not found
===>   Installing existing package /packages/All/pkgconf-1.7.3,1.txz
[121arm64-quarterly-job-16] Installing pkgconf-1.7.3,1...
[121arm64-quarterly-job-16] Extracting pkgconf-1.7.3,1: .......... done
===>   lammps-2020.09.18 depends on package: pkgconf>=1.3.0_1 - found
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   lammps-2020.09.18 depends on shared library: libfftw3.so - not found
===>   Installing existing package /packages/All/fftw3-3.3.8_6.txz
[121arm64-quarterly-job-16] Installing fftw3-3.3.8_6...
[121arm64-quarterly-job-16] Extracting fftw3-3.3.8_6: .......... done
===>   lammps-2020.09.18 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on shared library: libhdf5.so - not found
===>   Installing existing package /packages/All/hdf5-1.10.6,1.txz
[121arm64-quarterly-job-16] Installing hdf5-1.10.6,1...
[121arm64-quarterly-job-16] `-- Installing hdf-szip-2.1.1...
[121arm64-quarterly-job-16] `-- Extracting hdf-szip-2.1.1: .......... done
[121arm64-quarterly-job-16] Extracting hdf5-1.10.6,1: .......... done
===>   lammps-2020.09.18 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===>   lammps-2020.09.18 depends on shared library: libkim-api.so - not found
===>   Installing existing package /packages/All/kim-api-2.1.3.txz
[121arm64-quarterly-job-16] Installing kim-api-2.1.3...
[121arm64-quarterly-job-16] Extracting kim-api-2.1.3: .......... done
===>   lammps-2020.09.18 depends on shared library: libkim-api.so - found (/usr/local/lib/libkim-api.so)
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so)
===>   lammps-2020.09.18 depends on shared library: libkokkoscore.so - not found
===>   Installing existing package /packages/All/kokkos-3.2.00.txz
[121arm64-quarterly-job-16] Installing kokkos-3.2.00...
[121arm64-quarterly-job-16] Extracting kokkos-3.2.00: .......... done
===>   lammps-2020.09.18 depends on shared library: libkokkoscore.so - found (/usr/local/lib/libkokkoscore.so)
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on shared library: liblatte.so - not found
===>   Installing existing package /packages/All/latte-1.2.2.txz
[121arm64-quarterly-job-16] Installing latte-1.2.2...
[121arm64-quarterly-job-16] `-- Installing openblas-0.3.10,1...
[121arm64-quarterly-job-16] `-- Extracting openblas-0.3.10,1: .......... done
[121arm64-quarterly-job-16] `-- Installing openmpi-4.0.5...
[121arm64-quarterly-job-16] |   `-- Installing hwloc-1.11.11...
[121arm64-quarterly-job-16] |   `-- Extracting hwloc-1.11.11: .......... done
[121arm64-quarterly-job-16] |   `-- Installing libevent-2.1.12...
[121arm64-quarterly-job-16] |   `-- Extracting libevent-2.1.12: .......... done
[121arm64-quarterly-job-16] |   `-- Installing libltdl-2.4.6...
[121arm64-quarterly-job-16] |   `-- Extracting libltdl-2.4.6: .......... done
[121arm64-quarterly-job-16] |   `-- Installing munge-0.5.14_1...
[121arm64-quarterly-job-16] |   | `-- Installing perl5-5.32.0...
[121arm64-quarterly-job-16] |   | `-- Extracting perl5-5.32.0: .......... done
[121arm64-quarterly-job-16] |   `-- Extracting munge-0.5.14_1: ......... done
[121arm64-quarterly-job-16] |   `-- Installing slurm-wlm-20.02.1_4...
[121arm64-quarterly-job-16] |   | `-- Installing json-c-0.15...
[121arm64-quarterly-job-16] |   | `-- Extracting json-c-0.15: .......... done
[121arm64-quarterly-job-16] |   | `-- Installing libsysinfo-0.0.3_2...
[121arm64-quarterly-job-16] |   | `-- Extracting libsysinfo-0.0.3_2: ......... done
[121arm64-quarterly-job-16] |   | `-- Installing lua52-5.2.4...
[121arm64-quarterly-job-16] |   |   `-- Installing libedit-3.1.20191231,1...
[121arm64-quarterly-job-16] |   |   `-- Extracting libedit-3.1.20191231,1: .......... done
[121arm64-quarterly-job-16] |   | `-- Extracting lua52-5.2.4: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[121arm64-quarterly-job-16] |   `-- Extracting slurm-wlm-20.02.1_4: .......... done
[121arm64-quarterly-job-16] `-- Extracting openmpi-4.0.5: .......... done
[121arm64-quarterly-job-16] Extracting latte-1.2.2: ......... done
===>   lammps-2020.09.18 depends on shared library: liblatte.so - found (/usr/local/lib/liblatte.so)
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so)
===>   lammps-2020.09.18 depends on shared library: libplumed.so - not found
===>   Installing existing package /packages/All/plumed-2.6.1.txz
[121arm64-quarterly-job-16] Installing plumed-2.6.1...
[121arm64-quarterly-job-16] Extracting plumed-2.6.1: .......... done
===>   lammps-2020.09.18 depends on shared library: libplumed.so - found (/usr/local/lib/libplumed.so)
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so)
===>   lammps-2020.09.18 depends on shared library: libvoro++.so - not found
===>   Installing existing package /packages/All/voro++-0.4.6_1.txz
[121arm64-quarterly-job-16] Installing voro++-0.4.6_1...
[121arm64-quarterly-job-16] Extracting voro++-0.4.6_1: .......... done
===>   lammps-2020.09.18 depends on shared library: libvoro++.so - found (/usr/local/lib/libvoro++.so)
===>   Returning to build of lammps-2020.09.18
===>   lammps-2020.09.18 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===>   lammps-2020.09.18 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for lammps-2020.09.18
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/lammps/work/.build
-- The CXX compiler identification is Clang 8.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
-- Running check for auto-generated files from make-based build system
-- Found MPI_CXX: /usr/local/mpi/openmpi/lib/libmpi_cxx.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
CMake Error at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
  Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
Call Stack (most recent call first):
  /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
  /usr/local/share/cmake/Modules/FindOpenMP.cmake:580 (find_package_handle_standard_args)
  CMakeLists.txt:215 (find_package)


-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/lammps/work/.build/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/science/lammps/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1

Stop.
make: stopped in /usr/ports/science/lammps


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